C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 17 open reading frame 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588073 C17orf53-005 ENSG00000125319 9606 + 17:44154360-44162004 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryTestisENST00000588073
Transcript ID Brain Colon Liver Ovary Testis
ENST00000588073 0.054±0.00 0.172±0.00 0.153±0.00 10.924±0.00 5.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0005J4 CIL_0005J4_0001 CGP 17:44076746-44162476
CIL_0005J3 CIL_0005J3_0001 CGP 17:44141906-44179083

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100392 BC030867-002 protein_coding Mus_musculus 0 484
ENSMUST00000133930 BC030867-001 nonsense_mediated_decay Mus_musculus 0 394
ENSMUST00000152897 BC030867-005 processed_transcript Mus_musculus 0 377
ENSMUST00000148867 BC030867-004 processed_transcript Mus_musculus 0 377
ENSMUST00000140040 BC030867-003 processed_transcript Mus_musculus 6e-34 148

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