C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC030867
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034773 BC030867 10090 + 11:102248882-102265187 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100392 BC030867-002 102248882-102265187 protein_coding
  ENSMUST00000133930 BC030867-001 102248882-102265187 nonsense_mediated_decay
  ENSMUST00000140040 BC030867-003 102261964-102265187 processed_transcript
  ENSMUST00000148867 BC030867-004 102255652-102260616 processed_transcript
  ENSMUST00000152897 BC030867-005 102255656-102260614 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100392ENSMUST00000133930ENSMUST00000140040ENSMUST00000148867ENSMUST00000152897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100392 0.550±0.45 0.152±0.06 0.080±0.03 1.453±1.19 0.265±0.10 0.712±0.17 0.050±0.01 0.095±0.06 3.099±3.32 0.118±0.05 0.031±0.01 1.924±0.78 2.165±1.19 11.231±5.04
ENSMUST00000133930 N/A 0.079±0.00 0.055±0.00 N/A N/A N/A 0.052±0.03 N/A N/A 0.034±0.00 N/A 0.236±0.04 0.106±0.00 1.696±0.83
ENSMUST00000140040 N/A 0.331±0.15 N/A N/A 0.351±0.03 0.799±0.16 0.136±0.03 0.187±0.07 0.141±0.09 0.219±0.04 0.087±0.00 1.533±0.42 1.641±0.00 N/A
ENSMUST00000148867 N/A 0.139±0.00 N/A N/A N/A N/A 0.055±0.00 N/A N/A 0.115±0.00 0.104±0.00 N/A N/A 8.013±0.00
ENSMUST00000152897 N/A 0.251±0.01 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 1.029±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187
CIL_0005J3 CIL_0005J3_0002 CGP 11:102248882-102279462

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096229 C3H17orf53 chromosome 17 open reading frame 53 protein_coding Danio_rerio
ENSG00000125319 C17orf53 chromosome 17 open reading frame 53 protein_coding Homo_sapiens

Loading