C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD specific E3 ubiquitin protein ligase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100461 Smurf1-003 ENSMUSG00000038780 10090 - 5:144879111-144965847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000100461
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000100461 12.608±0.00 7.883±3.46 13.981±7.89 12.859±9.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TP CIL_0004TP_0002 CGP 5:144768092-144965847
CIL_0004TQ CIL_0004TQ_0002 CGP 5:144876495-145084030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0007179 IBA transforming growth factor beta receptor signaling pathway
GO:0016567 IMP protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030279 IMP negative regulation of ossification
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361125 SMURF1-001 protein_coding Homo_sapiens 0 1753
ENST00000361368 SMURF1-002 protein_coding Homo_sapiens 0 2880
ENST00000472627 SMURF1-003 processed_transcript Homo_sapiens 0 499
ENST00000480055 SMURF1-004 processed_transcript Homo_sapiens 0 791

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