C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004TQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198742-ENSG00000185467 CGP 9606 7:99027438-99207506
GeneTranscriptPositionBiotype
ENSG00000185467 (KPNA7)
karyopherin alpha 7 (importin alpha 8)
ENST00000327442 (KPNA7-001) 99173574-99207506 protein_coding
ENSG00000198742 (SMURF1)
SMAD specific E3 ubiquitin protein ligase 1
ENST00000361125 (SMURF1-001) 99027441-99144100 protein_coding
ENST00000361368 (SMURF1-002) 99027438-99144019 protein_coding
ENST00000472627 (SMURF1-003) 99057205-99144019 processed_transcript
ENST00000480055 (SMURF1-004) 99052212-99081427 processed_transcript
CIL_0004TQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038780-ENSMUSG00000038770 CGP 10090 5:144876495-145084030
GeneTranscriptPositionBiotype
ENSMUSG00000029620 (1700018F24Rik)
RIKEN cDNA 1700018F24 gene
ENSMUST00000031624 (1700018F24Rik-001) 145042990-145045681 protein_coding
ENSMUSG00000029621 (Arpc1a)
actin related protein 2/3 complex, subunit 1A
ENSMUST00000031625 (Arpc1a-001) 145083830-145108761 protein_coding
ENSMUST00000124379 (Arpc1a-004) 145084100-145097228 protein_coding
ENSMUST00000127694 (Arpc1a-002) 145083906-145108756 processed_transcript
ENSMUST00000134835 (Arpc1a-003) 145083884-145096183 processed_transcript
ENSMUST00000142276 (Arpc1a-006) 145104273-145108592 retained_intron
ENSMUST00000147564 (Arpc1a-005) 145096257-145098928 retained_intron
ENSMUSG00000038780 (Smurf1)
SMAD specific E3 ubiquitin protein ligase 1
ENSMUST00000085684 (Smurf1-001) 144876502-144965847 protein_coding
ENSMUST00000100461 (Smurf1-003) 144879111-144965847 protein_coding
ENSMUST00000110677 (Smurf1-002) 144876495-144965839 protein_coding
ENSMUST00000126822 (Smurf1-004) 144876495-144886476 retained_intron
ENSMUSG00000061707 (Gm4871)
predicted gene 4871
ENSMUST00000071421 (Gm4871-201) 145029600-145032764 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TQ_0001ENSG00000185467ENST00000327442ENSG00000198742ENST00000361125ENST00000361368ENST00000472627ENST00000480055CIL_0004TQ_0002ENSMUSG00000029620ENSMUST00000031624ENSMUSG00000029621ENSMUST00000031625ENSMUST00000124379ENSMUST00000127694ENSMUST00000134835ENSMUST00000142276ENSMUST00000147564ENSMUSG00000038780ENSMUST00000085684ENSMUST00000100461ENSMUST00000110677ENSMUST00000126822ENSMUSG00000061707ENSMUST00000071421
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TQ_0001ENSG00000185467ENST00000327442ENSG00000198742ENST00000361125ENST00000361368ENST00000480055CIL_0004TQ_0002ENSMUSG00000029620ENSMUST00000031624ENSMUSG00000029621ENSMUST00000031625ENSMUST00000134835ENSMUST00000142276ENSMUSG00000038780ENSMUST00000085684ENSMUST00000100461ENSMUST00000110677ENSMUST00000126822ENSMUSG00000061707ENSMUST00000071421
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185467 ENST00000327442 N/A 0.053±0.00 N/A 0.152±0.00 N/A 0.020±0.00 0.029±0.00 N/A 0.094±0.00 0.293±0.00 N/A 0.321±0.15 0.034±0.00 0.074±0.03
ENSG00000198742 ENST00000361125 2.015±0.00 N/A N/A 2.124±0.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361368 8.516±0.00 4.543±0.00 2.588±0.00 3.415±1.09 4.600±0.20 5.480±2.38 2.549±1.81 6.141±0.00 2.703±0.43 9.818±0.00 2.691±1.09 9.006±3.08 6.245±1.05 19.253±3.34
ENST00000472627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480055 N/A N/A N/A N/A N/A N/A N/A 5.859±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029620 ENSMUST00000031624 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.042±0.01 N/A 0.037±0.00 0.005±0.00 40.187±14.19
ENSMUSG00000029621 ENSMUST00000031625 73.581±8.76 49.472±10.15 139.889±17.17 78.539±18.72 53.324±10.52 52.556±7.59 30.522±3.21 66.647±2.09 39.806±6.98 70.709±1.92 11.757±0.85 64.365±15.40 53.962±17.83 67.274±21.83
ENSMUST00000124379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134835 N/A N/A N/A 126.794±0.00 N/A N/A N/A N/A N/A N/A N/A 124.912±0.00 149.993±37.55 176.400±0.00
ENSMUST00000142276 N/A N/A N/A 27.402±0.00 N/A N/A N/A N/A N/A N/A N/A 13.467±0.00 N/A N/A
ENSMUST00000147564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038780 ENSMUST00000085684 13.521±2.88 7.185±1.71 8.685±1.14 9.973±3.57 14.938±3.12 9.798±0.93 6.159±1.44 5.346±1.02 1.769±0.91 13.301±2.34 2.536±0.67 15.368±4.59 6.519±3.39 6.143±2.43
ENSMUST00000100461 N/A N/A N/A 12.608±0.00 N/A N/A N/A N/A N/A N/A N/A 7.883±3.46 13.981±7.89 12.859±9.06
ENSMUST00000110677 N/A N/A N/A 2.865±0.66 N/A N/A N/A N/A N/A N/A 0.768±0.12 N/A N/A N/A
ENSMUST00000126822 N/A 1.515±0.02 1.459±0.00 2.466±0.36 5.064±0.40 2.646±0.84 N/A 0.828±0.08 0.259±0.04 3.585±0.89 N/A 2.506±1.11 0.718±0.00 N/A
ENSMUSG00000061707 ENSMUST00000071421 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A 27.184±12.22

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