C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100775 Rad1-003 ENSMUSG00000022248 10090 + 15:10486069-10499063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000100775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000100775 0.390±0.08 0.887±0.25 1.938±0.00 0.391±0.11 0.431±0.17 0.425±0.16 0.212±0.02 0.346±0.00 0.331±0.06 0.604±0.19 1.124±0.58 0.192±0.06 0.707±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0006281 IEA DNA repair
GO:0008408 ISS 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231383 RAD1P1-001 processed_pseudogene Homo_sapiens 0 568
ENST00000325577 RAD1-002 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000341754 RAD1-003 protein_coding Homo_sapiens 0 754
ENST00000382038 RAD1-001 protein_coding Homo_sapiens 0 754
ENST00000506311 RAD1-004 retained_intron Homo_sapiens 0 213
ENST00000511456 RAD1-006 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000513914 RAD1-005 nonsense_mediated_decay Homo_sapiens 0 549

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