C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: superoxide dismutase 3, extracellular
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101208 Sod3-201 ENSMUSG00000072941 10090 + 5:52363946-52371405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101208
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101208 73.688±45.51 322.983±6.37 11.686±0.03 0.501±0.23 71.904±24.66 25.703±2.03 12.569±3.94 160.681±16.55 12.547±9.23 166.490±19.82 1.473±0.30 44.905±17.71 6.298±4.81 8.039±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OT CIL_0002OT_0002 CGP 5:52150209-52371405
CIL_0002OS CIL_0002OS_0002 CGP 5:52363946-52471543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IMP response to hypoxia
GO:0004784 IDA superoxide dismutase activity
GO:0005507 IBA copper ion binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005796 TAS Golgi lumen
GO:0005802 IDA trans-Golgi network
GO:0006979 IEA response to oxidative stress
GO:0008270 IBA zinc ion binding
GO:0019430 IBA removal of superoxide radicals
GO:0031012 IDA extracellular matrix
GO:0046688 IEA response to copper ion
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382120 SOD3-001 protein_coding Homo_sapiens 0 375

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