C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101432 Npas3-201 ENSMUSG00000021010 10090 + 12:53248677-54072175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101432 0.131±0.18 0.550±0.22 0.058±0.00 9.602±8.15 0.222±0.09 0.274±0.05 0.031±0.02 0.045±0.02 0.045±0.03 0.042±0.02 0.016±0.01 0.415±0.17 0.043±0.03 0.486±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RB CIL_0005RB_0003 CGP 12:52699383-54072175
CIL_0007M4 CIL_0007M4_0002 UCNEbase 12:52937233-54554218
CIL_0005RA CIL_0005RA_0003 CGP 12:53248677-54203860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001964 IGI startle response
GO:0003677 IEA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007626 IMP locomotory behavior
GO:0042711 IGI maternal behavior
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007777 NPAS3-201 protein_coding Danio_rerio 0 791
ENST00000346562 NPAS3-001 protein_coding Homo_sapiens 0 3864
ENST00000356141 NPAS3-004 protein_coding Homo_sapiens 0 3531
ENST00000357798 NPAS3-010 protein_coding Homo_sapiens 0 3057
ENST00000546849 NPAS3-013 protein_coding Homo_sapiens 0 363
ENST00000547068 NPAS3-008 protein_coding Homo_sapiens 0 819
ENST00000548645 NPAS3-006 protein_coding Homo_sapiens 0 3408
ENST00000549770 NPAS3-011 retained_intron Homo_sapiens 0 566
ENST00000551008 NPAS3-009 protein_coding Homo_sapiens 0 745
ENST00000551492 NPAS3-005 protein_coding Homo_sapiens 0 3687
ENST00000551634 NPAS3-007 protein_coding Homo_sapiens 0 3293
ENST00000552874 NPAS3-015 protein_coding Homo_sapiens 0 577

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