C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346562 NPAS3-001 ENSG00000151322 9606 + 14:32939243-33804176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungMuscleOvaryTestisENST00000346562
Transcript ID Adipose Bladder Brain Colon Liver Lung Muscle Ovary Testis
ENST00000346562 0.177±0.00 0.147±0.00 1.723±0.05 0.127±0.00 0.068±0.04 0.164±0.00 0.046±0.00 0.132±0.12 0.226±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RB CIL_0005RB_0002 CGP 14:32329273-33804176
CIL_0007M4 CIL_0007M4_0001 UCNEbase 14:32599473-34309899
CIL_0005RA CIL_0005RA_0002 CGP 14:32934933-34462774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101432 Npas3-201 protein_coding Mus_musculus 0 3864
ENSDART00000007777 NPAS3-201 protein_coding Danio_rerio 2.8026e-45 189

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