C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 57
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102496 Lrrc57-004 ENSMUSG00000027286 10090 - 2:120604238-120609315 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000102496
Transcript ID Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000102496 7.513±0.00 1.066±0.06 2.630±0.00 1.730±0.00 6.034±1.82 6.642±1.34 18.580±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PJ CIL_0005PJ_0002 CGP 2:120567671-120609520
CIL_0005PI CIL_0005PI_0002 CGP 2:120604238-120621560

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323443 LRRC57-001 protein_coding Homo_sapiens 0 935
ENST00000397130 LRRC57-002 protein_coding Homo_sapiens 0 935
ENST00000562868 LRRC57-006 retained_intron Homo_sapiens 0 309
ENST00000563454 LRRC57-003 protein_coding Homo_sapiens 0 933
ENST00000569830 LRRC57-004 retained_intron Homo_sapiens 0 603
ENST00000570160 LRRC57-005 protein_coding Homo_sapiens 0 580

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