C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4 receptor-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102514 Rtn4rl1-001 ENSMUSG00000045287 10090 + 11:75193783-75267769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102514 9.894±5.50 28.719±5.54 13.791±1.32 4.642±4.46 6.715±2.28 3.652±0.34 3.401±0.13 5.432±0.43 1.802±1.83 6.300±0.62 0.339±0.12 8.913±2.37 0.946±0.80 1.199±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435
CIL_0007KQ CIL_0007KQ_0002 UCNEbase 11:75016990-75215448
CIL_00000P CIL_00000P_0002 CGP 11:75177643-75267769
CIL_00037G CIL_00037G_0002 CGP 11:75193783-75348324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 ISS receptor activity
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0031103 TAS axon regeneration
GO:0045121 IEA membrane raft
GO:0046658 ISS anchored component of plasma membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331238 RTN4RL1-001 protein_coding Homo_sapiens 0 2078

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