| Source ID |
Type |
Tax ID |
Position |
| DPH1 |
UCNEbase |
7955 |
15:25126322-25126635  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KQ_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000070366' => 'SMG6 nonsense mediated mRNA decay factor',
'ENSG00000108963' => 'diphthamide biosynthesis 1',
'ENSG00000177374' => 'hypermethylated in cancer 1',
'ENSG00000185924' => 'reticulon 4 receptor-like 1',
'ENSG00000228133' => null,
'ENSG00000262402' => null,
'ENSG00000262445' => null,
'ENSG00000262533' => null,
'ENSG00000262664' => 'ovarian tumor suppressor candidate 2',
'ENSG00000262810' => null,
'ENSG00000262869' => null,
'ENSG00000263050' => null,
'ENSG00000265777' => 'RNA, 7SL, cytoplasmic 624, pseudogene',
'ENSG00000267195' => 'microRNA 212',
'ENSG00000267200' => 'microRNA 132',
'ENSG00000279040' => null,
'ENSG00000279340' => null,
'ENSG00000279562' => null,
'ENSG00000280333' => null,
'ENSMUSG00000038268' => 'candidate tumor suppressor in ovarian cancer 2',
'ENSMUSG00000038290' => 'Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)',
'ENSMUSG00000043099' => 'hypermethylated in cancer 1',
'ENSMUSG00000045287' => 'reticulon 4 receptor-like 1',
'ENSMUSG00000065537' => 'microRNA 132',
'ENSMUSG00000065590' => 'microRNA 212',
'ENSMUSG00000078789' => 'DPH1 homolog (S. cerevisiae)',
'ENSMUSG00000082481' => 'ribosomal protein S12, pseudogene 19',
'ENSMUSG00000085609' => 'RIKEN cDNA 1700016P03 gene',
'ENSMUSG00000085738' => 'predicted gene 12335',
'ENSMUSG00000085765' => 'predicted gene 12333'
),
'gene_name_arr' => array(
'ENSG00000070366' => 'SMG6',
'ENSG00000108963' => 'DPH1',
'ENSG00000177374' => 'HIC1',
'ENSG00000185924' => 'RTN4RL1',
'ENSG00000228133' => 'AC099684.1',
'ENSG00000262402' => 'RP11-667K14.8',
'ENSG00000262445' => 'CTD-2545H1.2',
'ENSG00000262533' => 'RP11-667K14.4',
'ENSG00000262664' => 'OVCA2',
'ENSG00000262810' => 'RP11-667K14.5',
'ENSG00000262869' => 'CTD-2545H1.1',
'ENSG00000263050' => 'RP11-667K14.3',
'ENSG00000265777' => 'RN7SL624P',
'ENSG00000267195' => 'MIR212',
'ENSG00000267200' => 'MIR132',
'ENSG00000279040' => 'RP11-667K14.13',
'ENSG00000279340' => 'RP11-667K14.9',
'ENSG00000279562' => 'RP11-667K14.10',
'ENSG00000280333' => 'RP11-667K14.14',
'ENSMUSG00000038268' => 'Ovca2',
'ENSMUSG00000038290' => 'Smg6',
'ENSMUSG00000043099' => 'Hic1',
'ENSMUSG00000045287' => 'Rtn4rl1',
'ENSMUSG00000065537' => 'Mir132',
'ENSMUSG00000065590' => 'Mir212',
'ENSMUSG00000078789' => 'Dph1',
'ENSMUSG00000082481' => 'Rps12-ps19',
'ENSMUSG00000085609' => '1700016P03Rik',
'ENSMUSG00000085738' => 'Gm12335',
'ENSMUSG00000085765' => 'Gm12333'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 92 => 'Colon',
(int) 113 => 'Heart',
(int) 133 => 'Kidney',
(int) 152 => 'Liver',
(int) 171 => 'Lung',
(int) 187 => 'Muscle',
(int) 203 => 'Ovary',
(int) 233 => 'Placenta',
(int) 254 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 83,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263073' => array(
'start' => '2059843',
'end' => '2303771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-001'
),
'ENST00000354901' => array(
'start' => '2059850',
'end' => '2266199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-002'
),
'ENST00000536871' => array(
'start' => '2061405',
'end' => '2237037',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-005'
),
'ENST00000570606' => array(
'start' => '2186725',
'end' => '2266131',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-021'
),
'ENST00000570659' => array(
'start' => '2172802',
'end' => '2244912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-019'
),
'ENST00000570668' => array(
'start' => '2186737',
'end' => '2240191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-013'
),
'ENST00000570756' => array(
'start' => '2059876',
'end' => '2082310',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-004'
),
'ENST00000570874' => array(
'start' => '2085783',
'end' => '2173071',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-011'
),
'ENST00000571442' => array(
'start' => '2172797',
'end' => '2237391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-015'
),
'ENST00000572205' => array(
'start' => '2172737',
'end' => '2229464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-018'
),
'ENST00000572369' => array(
'start' => '2172668',
'end' => '2214349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-008'
),
'ENST00000573153' => array(
'start' => '2061452',
'end' => '2066089',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-012'
),
'ENST00000573166' => array(
'start' => '2059846',
'end' => '2088761',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-003'
),
'ENST00000573827' => array(
'start' => '2061551',
'end' => '2072003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-023'
),
'ENST00000574501' => array(
'start' => '2059839',
'end' => '2062257',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-022'
),
'ENST00000575176' => array(
'start' => '2172712',
'end' => '2212737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-009'
),
'ENST00000575338' => array(
'start' => '2081916',
'end' => '2095112',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-007'
),
'ENST00000575454' => array(
'start' => '2068887',
'end' => '2173178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-010'
),
'ENST00000575663' => array(
'start' => '2172804',
'end' => '2237580',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-014'
),
'ENST00000576218' => array(
'start' => '2061374',
'end' => '2082301',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-020'
),
'ENST00000263083' => array(
'start' => '2030110',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-001'
),
'ENST00000263084' => array(
'start' => '2041553',
'end' => '2042628',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-019'
),
'ENST00000570477' => array(
'start' => '2033393',
'end' => '2042965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-003'
),
'ENST00000570833' => array(
'start' => '2033820',
'end' => '2039787',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-014'
),
'ENST00000570867' => array(
'start' => '2038965',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-005'
),
'ENST00000571418' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-007'
),
'ENST00000571710' => array(
'start' => '2040340',
'end' => '2043424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-009'
),
'ENST00000572214' => array(
'start' => '2036895',
'end' => '2042703',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-013'
),
'ENST00000572248' => array(
'start' => '2041281',
'end' => '2042690',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-016'
),
'ENST00000572684' => array(
'start' => '2040672',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-006'
),
'ENST00000572819' => array(
'start' => '2030167',
'end' => '2037181',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-011'
),
'ENST00000575162' => array(
'start' => '2041534',
'end' => '2042919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-017'
),
'ENST00000575667' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-002'
),
'ENST00000575998' => array(
'start' => '2039553',
'end' => '2040481',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-012'
),
'ENST00000576129' => array(
'start' => '2030186',
'end' => '2037283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-015'
),
'ENST00000576891' => array(
'start' => '2034886',
'end' => '2036956',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DPH1-010'
),
'ENST00000607788' => array(
'start' => '2041102',
'end' => '2043421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-018'
),
'ENST00000322941' => array(
'start' => '2056310',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-005'
),
'ENST00000399849' => array(
'start' => '2055099',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-201'
),
'ENST00000571875' => array(
'start' => '2054215',
'end' => '2056889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-002'
),
'ENST00000571990' => array(
'start' => '2054215',
'end' => '2056979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-003'
),
'ENST00000574370' => array(
'start' => '2054154',
'end' => '2056719',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-001'
),
'ENST00000576444' => array(
'start' => '2056219',
'end' => '2056943',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-004'
),
'ENST00000619757' => array(
'start' => '2055099',
'end' => '2063241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-006'
),
'ENST00000331238' => array(
'start' => '1934677',
'end' => '2025345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RTN4RL1-001'
),
'ENST00000425277' => array(
'start' => '2017883',
'end' => '2020706',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-001'
),
'ENST00000572287' => array(
'start' => '2017716',
'end' => '2019102',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-002'
),
'ENST00000573670' => array(
'start' => '2127430',
'end' => '2127904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-667K14.8-001'
),
'ENST00000574520' => array(
'start' => '1995614',
'end' => '2003671',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2545H1.2-001'
),
'ENST00000572404' => array(
'start' => '2042900',
'end' => '2043425',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.4-001'
),
'ENST00000572195' => array(
'start' => '2041936',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OVCA2-001'
),
'ENST00000571815' => array(
'start' => '2089681',
'end' => '2101560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.5-001'
),
'ENST00000574483' => array(
'start' => '2019952',
'end' => '2023664',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2545H1.1-001'
),
'ENST00000572790' => array(
'start' => '2043475',
'end' => '2044968',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-667K14.3-001'
),
'ENST00000580297' => array(
'start' => '2199762',
'end' => '2200039',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL624P-201'
),
'ENST00000586026' => array(
'start' => '2050271',
'end' => '2050380',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR212-201'
),
'ENST00000591554' => array(
'start' => '2049908',
'end' => '2050008',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR132-201'
),
'ENST00000623952' => array(
'start' => '2101542',
'end' => '2101667',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.13-001'
),
'ENST00000623339' => array(
'start' => '2122342',
'end' => '2122508',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.9-001'
),
'ENST00000623751' => array(
'start' => '2117626',
'end' => '2117772',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.10-001'
),
'ENST00000624308' => array(
'start' => '2072823',
'end' => '2072956',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.14-001'
),
'ENSMUST00000071562' => array(
'start' => '75175942',
'end' => '75178835',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ovca2-001'
),
'ENSMUST00000123489' => array(
'start' => '75177801',
'end' => '75178787',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ovca2-002'
),
'ENSMUST00000045281' => array(
'start' => '74925823',
'end' => '75164448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-001'
),
'ENSMUST00000130145' => array(
'start' => '74930520',
'end' => '75164448',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Smg6-003'
),
'ENSMUST00000135522' => array(
'start' => '74989361',
'end' => '74992206',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Smg6-002'
),
'ENSMUST00000140197' => array(
'start' => '74993853',
'end' => '75139369',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-004'
),
'ENSMUST00000142038' => array(
'start' => '75132435',
'end' => '75139369',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-005'
),
'ENSMUST00000153226' => array(
'start' => '75159633',
'end' => '75163182',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-006'
),
'ENSMUST00000055619' => array(
'start' => '75164565',
'end' => '75169519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hic1-001'
),
'ENSMUST00000131720' => array(
'start' => '75167153',
'end' => '75168146',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Hic1-002'
),
'ENSMUST00000102514' => array(
'start' => '75193783',
'end' => '75267769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rtn4rl1-001'
),
'ENSMUST00000083603' => array(
'start' => '75173665',
'end' => '75173765',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir132-201'
),
'ENSMUST00000083656' => array(
'start' => '75173388',
'end' => '75173478',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir212-201'
),
'ENSMUST00000044949' => array(
'start' => '75177643',
'end' => '75190519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-001'
),
'ENSMUST00000139958' => array(
'start' => '75180825',
'end' => '75191241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-002'
),
'ENSMUST00000148944' => array(
'start' => '75179189',
'end' => '75183515',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-005'
),
'ENSMUST00000150910' => array(
'start' => '75178296',
'end' => '75181312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-003'
),
'ENSMUST00000156489' => array(
'start' => '75177696',
'end' => '75183323',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dph1-004'
),
'ENSMUST00000119773' => array(
'start' => '75070814',
'end' => '75071213',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps19-001'
),
'ENSMUST00000134252' => array(
'start' => '75172560',
'end' => '75177633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1700016P03Rik-001'
),
'ENSMUST00000119738' => array(
'start' => '75066436',
'end' => '75066762',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12335-001'
),
'ENSMUST00000155508' => array(
'start' => '75036476',
'end' => '75039348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12333-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
'ENSG00000070366' => array(
[maximum depth reached]
),
'ENSG00000108963' => array(
[maximum depth reached]
),
'ENSG00000185924' => array(
[maximum depth reached]
),
'ENSG00000228133' => array(
[maximum depth reached]
),
'ENSG00000262402' => array(
[maximum depth reached]
),
'ENSG00000262445' => array(
[maximum depth reached]
),
'ENSG00000262533' => array(
[maximum depth reached]
),
'ENSG00000262664' => array(
[maximum depth reached]
),
'ENSG00000262810' => array(
[maximum depth reached]
),
'ENSG00000262869' => array(
[maximum depth reached]
),
'ENSG00000263050' => array(
[maximum depth reached]
),
'ENSG00000265777' => array(
[maximum depth reached]
),
'ENSG00000267200' => array(
[maximum depth reached]
),
'ENSG00000279040' => array(
[maximum depth reached]
),
'ENSG00000279340' => array(
[maximum depth reached]
),
'ENSG00000280333' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Lung',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Adipose',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Ovary',
(int) 32 => 'Bladder',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Placenta',
(int) 43 => 'Bladder',
(int) 44 => 'Lung',
(int) 45 => 'Lung',
(int) 46 => 'Ovary',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Brain',
(int) 94 => 'Breast',
(int) 95 => 'Colon',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Lung',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Muscle',
(int) 111 => 'Placenta',
(int) 112 => 'Adipose',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Liver',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Muscle',
(int) 145 => 'Ovary',
(int) 146 => 'Placenta',
(int) 147 => 'Testis',
(int) 148 => 'Kidney',
(int) 149 => 'Adipose',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Liver',
(int) 153 => 'Adrenal',
(int) 154 => 'Brain',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Ovary',
(int) 161 => 'Testis'
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038268' => array(
[maximum depth reached]
),
'ENSMUSG00000038290' => array(
[maximum depth reached]
),
'ENSMUSG00000043099' => array(
[maximum depth reached]
),
'ENSMUSG00000045287' => array(
[maximum depth reached]
),
'ENSMUSG00000065537' => array(
[maximum depth reached]
),
'ENSMUSG00000065590' => array(
[maximum depth reached]
),
'ENSMUSG00000078789' => array(
[maximum depth reached]
),
'ENSMUSG00000082481' => array(
[maximum depth reached]
),
'ENSMUSG00000085738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Muscle',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Brain',
(int) 44 => 'Breast',
(int) 45 => 'Colon',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Breast',
(int) 86 => 'Ovary',
(int) 87 => 'Ovary',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Bladder',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000070366' => 'SMG6 nonsense mediated mRNA decay factor',
'ENSG00000108963' => 'diphthamide biosynthesis 1',
'ENSG00000177374' => 'hypermethylated in cancer 1',
'ENSG00000185924' => 'reticulon 4 receptor-like 1',
'ENSG00000228133' => null,
'ENSG00000262402' => null,
'ENSG00000262445' => null,
'ENSG00000262533' => null,
'ENSG00000262664' => 'ovarian tumor suppressor candidate 2',
'ENSG00000262810' => null,
'ENSG00000262869' => null,
'ENSG00000263050' => null,
'ENSG00000265777' => 'RNA, 7SL, cytoplasmic 624, pseudogene',
'ENSG00000267195' => 'microRNA 212',
'ENSG00000267200' => 'microRNA 132',
'ENSG00000279040' => null,
'ENSG00000279340' => null,
'ENSG00000279562' => null,
'ENSG00000280333' => null,
'ENSMUSG00000038268' => 'candidate tumor suppressor in ovarian cancer 2',
'ENSMUSG00000038290' => 'Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)',
'ENSMUSG00000043099' => 'hypermethylated in cancer 1',
'ENSMUSG00000045287' => 'reticulon 4 receptor-like 1',
'ENSMUSG00000065537' => 'microRNA 132',
'ENSMUSG00000065590' => 'microRNA 212',
'ENSMUSG00000078789' => 'DPH1 homolog (S. cerevisiae)',
'ENSMUSG00000082481' => 'ribosomal protein S12, pseudogene 19',
'ENSMUSG00000085609' => 'RIKEN cDNA 1700016P03 gene',
'ENSMUSG00000085738' => 'predicted gene 12335',
'ENSMUSG00000085765' => 'predicted gene 12333'
)
$gene_name_arr = array(
'ENSG00000070366' => 'SMG6',
'ENSG00000108963' => 'DPH1',
'ENSG00000177374' => 'HIC1',
'ENSG00000185924' => 'RTN4RL1',
'ENSG00000228133' => 'AC099684.1',
'ENSG00000262402' => 'RP11-667K14.8',
'ENSG00000262445' => 'CTD-2545H1.2',
'ENSG00000262533' => 'RP11-667K14.4',
'ENSG00000262664' => 'OVCA2',
'ENSG00000262810' => 'RP11-667K14.5',
'ENSG00000262869' => 'CTD-2545H1.1',
'ENSG00000263050' => 'RP11-667K14.3',
'ENSG00000265777' => 'RN7SL624P',
'ENSG00000267195' => 'MIR212',
'ENSG00000267200' => 'MIR132',
'ENSG00000279040' => 'RP11-667K14.13',
'ENSG00000279340' => 'RP11-667K14.9',
'ENSG00000279562' => 'RP11-667K14.10',
'ENSG00000280333' => 'RP11-667K14.14',
'ENSMUSG00000038268' => 'Ovca2',
'ENSMUSG00000038290' => 'Smg6',
'ENSMUSG00000043099' => 'Hic1',
'ENSMUSG00000045287' => 'Rtn4rl1',
'ENSMUSG00000065537' => 'Mir132',
'ENSMUSG00000065590' => 'Mir212',
'ENSMUSG00000078789' => 'Dph1',
'ENSMUSG00000082481' => 'Rps12-ps19',
'ENSMUSG00000085609' => '1700016P03Rik',
'ENSMUSG00000085738' => 'Gm12335',
'ENSMUSG00000085765' => 'Gm12333'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0001',
'tax_id' => '9606',
'chromosome' => '17',
'seq_start' => '1996571',
'seq_end' => '2212289',
'region_length' => '215718',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '75016990',
'seq_end' => '75215448',
'region_length' => '198458',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '25126322',
'seq_end' => '25126635',
'region_length' => '313',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 92 => 'Colon',
(int) 113 => 'Heart',
(int) 133 => 'Kidney',
(int) 152 => 'Liver',
(int) 171 => 'Lung',
(int) 187 => 'Muscle',
(int) 203 => 'Ovary',
(int) 233 => 'Placenta',
(int) 254 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 83
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263073' => array(
'start' => '2059843',
'end' => '2303771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-001'
),
'ENST00000354901' => array(
'start' => '2059850',
'end' => '2266199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-002'
),
'ENST00000536871' => array(
'start' => '2061405',
'end' => '2237037',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-005'
),
'ENST00000570606' => array(
'start' => '2186725',
'end' => '2266131',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-021'
),
'ENST00000570659' => array(
'start' => '2172802',
'end' => '2244912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-019'
),
'ENST00000570668' => array(
'start' => '2186737',
'end' => '2240191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-013'
),
'ENST00000570756' => array(
'start' => '2059876',
'end' => '2082310',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-004'
),
'ENST00000570874' => array(
'start' => '2085783',
'end' => '2173071',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-011'
),
'ENST00000571442' => array(
'start' => '2172797',
'end' => '2237391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-015'
),
'ENST00000572205' => array(
'start' => '2172737',
'end' => '2229464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-018'
),
'ENST00000572369' => array(
'start' => '2172668',
'end' => '2214349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-008'
),
'ENST00000573153' => array(
'start' => '2061452',
'end' => '2066089',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-012'
),
'ENST00000573166' => array(
'start' => '2059846',
'end' => '2088761',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-003'
),
'ENST00000573827' => array(
'start' => '2061551',
'end' => '2072003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-023'
),
'ENST00000574501' => array(
'start' => '2059839',
'end' => '2062257',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-022'
),
'ENST00000575176' => array(
'start' => '2172712',
'end' => '2212737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-009'
),
'ENST00000575338' => array(
'start' => '2081916',
'end' => '2095112',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-007'
),
'ENST00000575454' => array(
'start' => '2068887',
'end' => '2173178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-010'
),
'ENST00000575663' => array(
'start' => '2172804',
'end' => '2237580',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-014'
),
'ENST00000576218' => array(
'start' => '2061374',
'end' => '2082301',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-020'
),
'ENST00000263083' => array(
'start' => '2030110',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-001'
),
'ENST00000263084' => array(
'start' => '2041553',
'end' => '2042628',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-019'
),
'ENST00000570477' => array(
'start' => '2033393',
'end' => '2042965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-003'
),
'ENST00000570833' => array(
'start' => '2033820',
'end' => '2039787',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-014'
),
'ENST00000570867' => array(
'start' => '2038965',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-005'
),
'ENST00000571418' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-007'
),
'ENST00000571710' => array(
'start' => '2040340',
'end' => '2043424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-009'
),
'ENST00000572214' => array(
'start' => '2036895',
'end' => '2042703',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-013'
),
'ENST00000572248' => array(
'start' => '2041281',
'end' => '2042690',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-016'
),
'ENST00000572684' => array(
'start' => '2040672',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-006'
),
'ENST00000572819' => array(
'start' => '2030167',
'end' => '2037181',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-011'
),
'ENST00000575162' => array(
'start' => '2041534',
'end' => '2042919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-017'
),
'ENST00000575667' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-002'
),
'ENST00000575998' => array(
'start' => '2039553',
'end' => '2040481',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-012'
),
'ENST00000576129' => array(
'start' => '2030186',
'end' => '2037283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-015'
),
'ENST00000576891' => array(
'start' => '2034886',
'end' => '2036956',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DPH1-010'
),
'ENST00000607788' => array(
'start' => '2041102',
'end' => '2043421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-018'
),
'ENST00000322941' => array(
'start' => '2056310',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-005'
),
'ENST00000399849' => array(
'start' => '2055099',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-201'
),
'ENST00000571875' => array(
'start' => '2054215',
'end' => '2056889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-002'
),
'ENST00000571990' => array(
'start' => '2054215',
'end' => '2056979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-003'
),
'ENST00000574370' => array(
'start' => '2054154',
'end' => '2056719',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-001'
),
'ENST00000576444' => array(
'start' => '2056219',
'end' => '2056943',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-004'
),
'ENST00000619757' => array(
'start' => '2055099',
'end' => '2063241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-006'
),
'ENST00000331238' => array(
'start' => '1934677',
'end' => '2025345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RTN4RL1-001'
),
'ENST00000425277' => array(
'start' => '2017883',
'end' => '2020706',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-001'
),
'ENST00000572287' => array(
'start' => '2017716',
'end' => '2019102',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-002'
),
'ENST00000573670' => array(
'start' => '2127430',
'end' => '2127904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-667K14.8-001'
),
'ENST00000574520' => array(
'start' => '1995614',
'end' => '2003671',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2545H1.2-001'
),
'ENST00000572404' => array(
'start' => '2042900',
'end' => '2043425',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.4-001'
),
'ENST00000572195' => array(
'start' => '2041936',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OVCA2-001'
),
'ENST00000571815' => array(
'start' => '2089681',
'end' => '2101560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.5-001'
),
'ENST00000574483' => array(
'start' => '2019952',
'end' => '2023664',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2545H1.1-001'
),
'ENST00000572790' => array(
'start' => '2043475',
'end' => '2044968',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-667K14.3-001'
),
'ENST00000580297' => array(
'start' => '2199762',
'end' => '2200039',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL624P-201'
),
'ENST00000586026' => array(
'start' => '2050271',
'end' => '2050380',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR212-201'
),
'ENST00000591554' => array(
'start' => '2049908',
'end' => '2050008',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR132-201'
),
'ENST00000623952' => array(
'start' => '2101542',
'end' => '2101667',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.13-001'
),
'ENST00000623339' => array(
'start' => '2122342',
'end' => '2122508',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.9-001'
),
'ENST00000623751' => array(
'start' => '2117626',
'end' => '2117772',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.10-001'
),
'ENST00000624308' => array(
'start' => '2072823',
'end' => '2072956',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.14-001'
),
'ENSMUST00000071562' => array(
'start' => '75175942',
'end' => '75178835',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ovca2-001'
),
'ENSMUST00000123489' => array(
'start' => '75177801',
'end' => '75178787',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ovca2-002'
),
'ENSMUST00000045281' => array(
'start' => '74925823',
'end' => '75164448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-001'
),
'ENSMUST00000130145' => array(
'start' => '74930520',
'end' => '75164448',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Smg6-003'
),
'ENSMUST00000135522' => array(
'start' => '74989361',
'end' => '74992206',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Smg6-002'
),
'ENSMUST00000140197' => array(
'start' => '74993853',
'end' => '75139369',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-004'
),
'ENSMUST00000142038' => array(
'start' => '75132435',
'end' => '75139369',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-005'
),
'ENSMUST00000153226' => array(
'start' => '75159633',
'end' => '75163182',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-006'
),
'ENSMUST00000055619' => array(
'start' => '75164565',
'end' => '75169519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hic1-001'
),
'ENSMUST00000131720' => array(
'start' => '75167153',
'end' => '75168146',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Hic1-002'
),
'ENSMUST00000102514' => array(
'start' => '75193783',
'end' => '75267769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rtn4rl1-001'
),
'ENSMUST00000083603' => array(
'start' => '75173665',
'end' => '75173765',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir132-201'
),
'ENSMUST00000083656' => array(
'start' => '75173388',
'end' => '75173478',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir212-201'
),
'ENSMUST00000044949' => array(
'start' => '75177643',
'end' => '75190519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-001'
),
'ENSMUST00000139958' => array(
'start' => '75180825',
'end' => '75191241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-002'
),
'ENSMUST00000148944' => array(
'start' => '75179189',
'end' => '75183515',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-005'
),
'ENSMUST00000150910' => array(
'start' => '75178296',
'end' => '75181312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-003'
),
'ENSMUST00000156489' => array(
'start' => '75177696',
'end' => '75183323',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dph1-004'
),
'ENSMUST00000119773' => array(
'start' => '75070814',
'end' => '75071213',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps19-001'
),
'ENSMUST00000134252' => array(
'start' => '75172560',
'end' => '75177633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1700016P03Rik-001'
),
'ENSMUST00000119738' => array(
'start' => '75066436',
'end' => '75066762',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12335-001'
),
'ENSMUST00000155508' => array(
'start' => '75036476',
'end' => '75039348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12333-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
'ENSG00000070366' => array(
[maximum depth reached]
),
'ENSG00000108963' => array(
[maximum depth reached]
),
'ENSG00000185924' => array(
[maximum depth reached]
),
'ENSG00000228133' => array(
[maximum depth reached]
),
'ENSG00000262402' => array(
[maximum depth reached]
),
'ENSG00000262445' => array(
[maximum depth reached]
),
'ENSG00000262533' => array(
[maximum depth reached]
),
'ENSG00000262664' => array(
[maximum depth reached]
),
'ENSG00000262810' => array(
[maximum depth reached]
),
'ENSG00000262869' => array(
[maximum depth reached]
),
'ENSG00000263050' => array(
[maximum depth reached]
),
'ENSG00000265777' => array(
[maximum depth reached]
),
'ENSG00000267200' => array(
[maximum depth reached]
),
'ENSG00000279040' => array(
[maximum depth reached]
),
'ENSG00000279340' => array(
[maximum depth reached]
),
'ENSG00000280333' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Lung',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Adipose',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Ovary',
(int) 32 => 'Bladder',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Placenta',
(int) 43 => 'Bladder',
(int) 44 => 'Lung',
(int) 45 => 'Lung',
(int) 46 => 'Ovary',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Brain',
(int) 94 => 'Breast',
(int) 95 => 'Colon',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Lung',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Muscle',
(int) 111 => 'Placenta',
(int) 112 => 'Adipose',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Liver',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Muscle',
(int) 145 => 'Ovary',
(int) 146 => 'Placenta',
(int) 147 => 'Testis',
(int) 148 => 'Kidney',
(int) 149 => 'Adipose',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Liver',
(int) 153 => 'Adrenal',
(int) 154 => 'Brain',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Ovary',
(int) 161 => 'Testis'
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038268' => array(
[maximum depth reached]
),
'ENSMUSG00000038290' => array(
[maximum depth reached]
),
'ENSMUSG00000043099' => array(
[maximum depth reached]
),
'ENSMUSG00000045287' => array(
[maximum depth reached]
),
'ENSMUSG00000065537' => array(
[maximum depth reached]
),
'ENSMUSG00000065590' => array(
[maximum depth reached]
),
'ENSMUSG00000078789' => array(
[maximum depth reached]
),
'ENSMUSG00000082481' => array(
[maximum depth reached]
),
'ENSMUSG00000085738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Muscle',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Brain',
(int) 44 => 'Breast',
(int) 45 => 'Colon',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Breast',
(int) 86 => 'Ovary',
(int) 87 => 'Ovary',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Bladder',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '25126322',
'seq_end' => '25126635',
'region_length' => '313',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
)
$gene_el = array(
'ENSMUST00000119738' => array(
'Adipose' => array(
'average_FPKM' => '0.705',
'stddev_FPKM' => '0.24'
),
'Adrenal' => array(
'average_FPKM' => '0.654',
'stddev_FPKM' => '0.07'
),
'Bladder' => array(
'average_FPKM' => '0.776',
'stddev_FPKM' => '0.18'
),
'Brain' => array(
'average_FPKM' => '0.830',
'stddev_FPKM' => '0.08'
),
'Breast' => array(
'average_FPKM' => '0.709',
'stddev_FPKM' => '0.37'
),
'Colon' => array(
'average_FPKM' => '1.131',
'stddev_FPKM' => '0.68'
),
'Heart' => array(
'average_FPKM' => '0.438',
'stddev_FPKM' => '0.22'
),
'Kidney' => array(
'average_FPKM' => '1.174',
'stddev_FPKM' => '0.75'
),
'Liver' => array(
'average_FPKM' => '0.445',
'stddev_FPKM' => '0.21'
),
'Lung' => array(
'average_FPKM' => '0.538',
'stddev_FPKM' => '0.19'
),
'Ovary' => array(
'average_FPKM' => '0.812',
'stddev_FPKM' => '0.46'
),
'Placenta' => array(
'average_FPKM' => '0.605',
'stddev_FPKM' => '0.43'
),
'Testis' => array(
'average_FPKM' => '0.396',
'stddev_FPKM' => '0.35'
)
)
)
$gene_key = 'ENSMUSG00000085738'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.705',
'stddev_FPKM' => '0.24'
),
'Adrenal' => array(
'average_FPKM' => '0.654',
'stddev_FPKM' => '0.07'
),
'Bladder' => array(
'average_FPKM' => '0.776',
'stddev_FPKM' => '0.18'
),
'Brain' => array(
'average_FPKM' => '0.830',
'stddev_FPKM' => '0.08'
),
'Breast' => array(
'average_FPKM' => '0.709',
'stddev_FPKM' => '0.37'
),
'Colon' => array(
'average_FPKM' => '1.131',
'stddev_FPKM' => '0.68'
),
'Heart' => array(
'average_FPKM' => '0.438',
'stddev_FPKM' => '0.22'
),
'Kidney' => array(
'average_FPKM' => '1.174',
'stddev_FPKM' => '0.75'
),
'Liver' => array(
'average_FPKM' => '0.445',
'stddev_FPKM' => '0.21'
),
'Lung' => array(
'average_FPKM' => '0.538',
'stddev_FPKM' => '0.19'
),
'Ovary' => array(
'average_FPKM' => '0.812',
'stddev_FPKM' => '0.46'
),
'Placenta' => array(
'average_FPKM' => '0.605',
'stddev_FPKM' => '0.43'
),
'Testis' => array(
'average_FPKM' => '0.396',
'stddev_FPKM' => '0.35'
)
)
$tran_key = 'ENSMUST00000119738'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000070366' => 'SMG6 nonsense mediated mRNA decay factor',
'ENSG00000108963' => 'diphthamide biosynthesis 1',
'ENSG00000177374' => 'hypermethylated in cancer 1',
'ENSG00000185924' => 'reticulon 4 receptor-like 1',
'ENSG00000228133' => null,
'ENSG00000262402' => null,
'ENSG00000262445' => null,
'ENSG00000262533' => null,
'ENSG00000262664' => 'ovarian tumor suppressor candidate 2',
'ENSG00000262810' => null,
'ENSG00000262869' => null,
'ENSG00000263050' => null,
'ENSG00000265777' => 'RNA, 7SL, cytoplasmic 624, pseudogene',
'ENSG00000267195' => 'microRNA 212',
'ENSG00000267200' => 'microRNA 132',
'ENSG00000279040' => null,
'ENSG00000279340' => null,
'ENSG00000279562' => null,
'ENSG00000280333' => null,
'ENSMUSG00000038268' => 'candidate tumor suppressor in ovarian cancer 2',
'ENSMUSG00000038290' => 'Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)',
'ENSMUSG00000043099' => 'hypermethylated in cancer 1',
'ENSMUSG00000045287' => 'reticulon 4 receptor-like 1',
'ENSMUSG00000065537' => 'microRNA 132',
'ENSMUSG00000065590' => 'microRNA 212',
'ENSMUSG00000078789' => 'DPH1 homolog (S. cerevisiae)',
'ENSMUSG00000082481' => 'ribosomal protein S12, pseudogene 19',
'ENSMUSG00000085609' => 'RIKEN cDNA 1700016P03 gene',
'ENSMUSG00000085738' => 'predicted gene 12335',
'ENSMUSG00000085765' => 'predicted gene 12333'
),
'gene_name_arr' => array(
'ENSG00000070366' => 'SMG6',
'ENSG00000108963' => 'DPH1',
'ENSG00000177374' => 'HIC1',
'ENSG00000185924' => 'RTN4RL1',
'ENSG00000228133' => 'AC099684.1',
'ENSG00000262402' => 'RP11-667K14.8',
'ENSG00000262445' => 'CTD-2545H1.2',
'ENSG00000262533' => 'RP11-667K14.4',
'ENSG00000262664' => 'OVCA2',
'ENSG00000262810' => 'RP11-667K14.5',
'ENSG00000262869' => 'CTD-2545H1.1',
'ENSG00000263050' => 'RP11-667K14.3',
'ENSG00000265777' => 'RN7SL624P',
'ENSG00000267195' => 'MIR212',
'ENSG00000267200' => 'MIR132',
'ENSG00000279040' => 'RP11-667K14.13',
'ENSG00000279340' => 'RP11-667K14.9',
'ENSG00000279562' => 'RP11-667K14.10',
'ENSG00000280333' => 'RP11-667K14.14',
'ENSMUSG00000038268' => 'Ovca2',
'ENSMUSG00000038290' => 'Smg6',
'ENSMUSG00000043099' => 'Hic1',
'ENSMUSG00000045287' => 'Rtn4rl1',
'ENSMUSG00000065537' => 'Mir132',
'ENSMUSG00000065590' => 'Mir212',
'ENSMUSG00000078789' => 'Dph1',
'ENSMUSG00000082481' => 'Rps12-ps19',
'ENSMUSG00000085609' => '1700016P03Rik',
'ENSMUSG00000085738' => 'Gm12335',
'ENSMUSG00000085765' => 'Gm12333'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 92 => 'Colon',
(int) 113 => 'Heart',
(int) 133 => 'Kidney',
(int) 152 => 'Liver',
(int) 171 => 'Lung',
(int) 187 => 'Muscle',
(int) 203 => 'Ovary',
(int) 233 => 'Placenta',
(int) 254 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 83,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263073' => array(
'start' => '2059843',
'end' => '2303771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-001'
),
'ENST00000354901' => array(
'start' => '2059850',
'end' => '2266199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-002'
),
'ENST00000536871' => array(
'start' => '2061405',
'end' => '2237037',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-005'
),
'ENST00000570606' => array(
'start' => '2186725',
'end' => '2266131',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-021'
),
'ENST00000570659' => array(
'start' => '2172802',
'end' => '2244912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-019'
),
'ENST00000570668' => array(
'start' => '2186737',
'end' => '2240191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-013'
),
'ENST00000570756' => array(
'start' => '2059876',
'end' => '2082310',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-004'
),
'ENST00000570874' => array(
'start' => '2085783',
'end' => '2173071',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-011'
),
'ENST00000571442' => array(
'start' => '2172797',
'end' => '2237391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-015'
),
'ENST00000572205' => array(
'start' => '2172737',
'end' => '2229464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-018'
),
'ENST00000572369' => array(
'start' => '2172668',
'end' => '2214349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-008'
),
'ENST00000573153' => array(
'start' => '2061452',
'end' => '2066089',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-012'
),
'ENST00000573166' => array(
'start' => '2059846',
'end' => '2088761',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-003'
),
'ENST00000573827' => array(
'start' => '2061551',
'end' => '2072003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-023'
),
'ENST00000574501' => array(
'start' => '2059839',
'end' => '2062257',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-022'
),
'ENST00000575176' => array(
'start' => '2172712',
'end' => '2212737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-009'
),
'ENST00000575338' => array(
'start' => '2081916',
'end' => '2095112',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-007'
),
'ENST00000575454' => array(
'start' => '2068887',
'end' => '2173178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-010'
),
'ENST00000575663' => array(
'start' => '2172804',
'end' => '2237580',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-014'
),
'ENST00000576218' => array(
'start' => '2061374',
'end' => '2082301',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-020'
),
'ENST00000263083' => array(
'start' => '2030110',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-001'
),
'ENST00000263084' => array(
'start' => '2041553',
'end' => '2042628',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-019'
),
'ENST00000570477' => array(
'start' => '2033393',
'end' => '2042965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-003'
),
'ENST00000570833' => array(
'start' => '2033820',
'end' => '2039787',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-014'
),
'ENST00000570867' => array(
'start' => '2038965',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-005'
),
'ENST00000571418' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-007'
),
'ENST00000571710' => array(
'start' => '2040340',
'end' => '2043424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-009'
),
'ENST00000572214' => array(
'start' => '2036895',
'end' => '2042703',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-013'
),
'ENST00000572248' => array(
'start' => '2041281',
'end' => '2042690',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-016'
),
'ENST00000572684' => array(
'start' => '2040672',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-006'
),
'ENST00000572819' => array(
'start' => '2030167',
'end' => '2037181',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-011'
),
'ENST00000575162' => array(
'start' => '2041534',
'end' => '2042919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-017'
),
'ENST00000575667' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-002'
),
'ENST00000575998' => array(
'start' => '2039553',
'end' => '2040481',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-012'
),
'ENST00000576129' => array(
'start' => '2030186',
'end' => '2037283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-015'
),
'ENST00000576891' => array(
'start' => '2034886',
'end' => '2036956',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DPH1-010'
),
'ENST00000607788' => array(
'start' => '2041102',
'end' => '2043421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-018'
),
'ENST00000322941' => array(
'start' => '2056310',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-005'
),
'ENST00000399849' => array(
'start' => '2055099',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-201'
),
'ENST00000571875' => array(
'start' => '2054215',
'end' => '2056889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-002'
),
'ENST00000571990' => array(
'start' => '2054215',
'end' => '2056979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-003'
),
'ENST00000574370' => array(
'start' => '2054154',
'end' => '2056719',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-001'
),
'ENST00000576444' => array(
'start' => '2056219',
'end' => '2056943',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-004'
),
'ENST00000619757' => array(
'start' => '2055099',
'end' => '2063241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-006'
),
'ENST00000331238' => array(
'start' => '1934677',
'end' => '2025345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RTN4RL1-001'
),
'ENST00000425277' => array(
'start' => '2017883',
'end' => '2020706',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-001'
),
'ENST00000572287' => array(
'start' => '2017716',
'end' => '2019102',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-002'
),
'ENST00000573670' => array(
'start' => '2127430',
'end' => '2127904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-667K14.8-001'
),
'ENST00000574520' => array(
'start' => '1995614',
'end' => '2003671',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2545H1.2-001'
),
'ENST00000572404' => array(
'start' => '2042900',
'end' => '2043425',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.4-001'
),
'ENST00000572195' => array(
'start' => '2041936',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OVCA2-001'
),
'ENST00000571815' => array(
'start' => '2089681',
'end' => '2101560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.5-001'
),
'ENST00000574483' => array(
'start' => '2019952',
'end' => '2023664',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2545H1.1-001'
),
'ENST00000572790' => array(
'start' => '2043475',
'end' => '2044968',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-667K14.3-001'
),
'ENST00000580297' => array(
'start' => '2199762',
'end' => '2200039',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL624P-201'
),
'ENST00000586026' => array(
'start' => '2050271',
'end' => '2050380',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR212-201'
),
'ENST00000591554' => array(
'start' => '2049908',
'end' => '2050008',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR132-201'
),
'ENST00000623952' => array(
'start' => '2101542',
'end' => '2101667',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.13-001'
),
'ENST00000623339' => array(
'start' => '2122342',
'end' => '2122508',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.9-001'
),
'ENST00000623751' => array(
'start' => '2117626',
'end' => '2117772',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.10-001'
),
'ENST00000624308' => array(
'start' => '2072823',
'end' => '2072956',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.14-001'
),
'ENSMUST00000071562' => array(
'start' => '75175942',
'end' => '75178835',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ovca2-001'
),
'ENSMUST00000123489' => array(
'start' => '75177801',
'end' => '75178787',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ovca2-002'
),
'ENSMUST00000045281' => array(
'start' => '74925823',
'end' => '75164448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-001'
),
'ENSMUST00000130145' => array(
'start' => '74930520',
'end' => '75164448',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Smg6-003'
),
'ENSMUST00000135522' => array(
'start' => '74989361',
'end' => '74992206',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Smg6-002'
),
'ENSMUST00000140197' => array(
'start' => '74993853',
'end' => '75139369',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-004'
),
'ENSMUST00000142038' => array(
'start' => '75132435',
'end' => '75139369',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-005'
),
'ENSMUST00000153226' => array(
'start' => '75159633',
'end' => '75163182',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-006'
),
'ENSMUST00000055619' => array(
'start' => '75164565',
'end' => '75169519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hic1-001'
),
'ENSMUST00000131720' => array(
'start' => '75167153',
'end' => '75168146',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Hic1-002'
),
'ENSMUST00000102514' => array(
'start' => '75193783',
'end' => '75267769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rtn4rl1-001'
),
'ENSMUST00000083603' => array(
'start' => '75173665',
'end' => '75173765',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir132-201'
),
'ENSMUST00000083656' => array(
'start' => '75173388',
'end' => '75173478',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir212-201'
),
'ENSMUST00000044949' => array(
'start' => '75177643',
'end' => '75190519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-001'
),
'ENSMUST00000139958' => array(
'start' => '75180825',
'end' => '75191241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-002'
),
'ENSMUST00000148944' => array(
'start' => '75179189',
'end' => '75183515',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-005'
),
'ENSMUST00000150910' => array(
'start' => '75178296',
'end' => '75181312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-003'
),
'ENSMUST00000156489' => array(
'start' => '75177696',
'end' => '75183323',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dph1-004'
),
'ENSMUST00000119773' => array(
'start' => '75070814',
'end' => '75071213',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps19-001'
),
'ENSMUST00000134252' => array(
'start' => '75172560',
'end' => '75177633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1700016P03Rik-001'
),
'ENSMUST00000119738' => array(
'start' => '75066436',
'end' => '75066762',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12335-001'
),
'ENSMUST00000155508' => array(
'start' => '75036476',
'end' => '75039348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12333-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
'ENSG00000070366' => array(
[maximum depth reached]
),
'ENSG00000108963' => array(
[maximum depth reached]
),
'ENSG00000185924' => array(
[maximum depth reached]
),
'ENSG00000228133' => array(
[maximum depth reached]
),
'ENSG00000262402' => array(
[maximum depth reached]
),
'ENSG00000262445' => array(
[maximum depth reached]
),
'ENSG00000262533' => array(
[maximum depth reached]
),
'ENSG00000262664' => array(
[maximum depth reached]
),
'ENSG00000262810' => array(
[maximum depth reached]
),
'ENSG00000262869' => array(
[maximum depth reached]
),
'ENSG00000263050' => array(
[maximum depth reached]
),
'ENSG00000265777' => array(
[maximum depth reached]
),
'ENSG00000267200' => array(
[maximum depth reached]
),
'ENSG00000279040' => array(
[maximum depth reached]
),
'ENSG00000279340' => array(
[maximum depth reached]
),
'ENSG00000280333' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Lung',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Adipose',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Ovary',
(int) 32 => 'Bladder',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Placenta',
(int) 43 => 'Bladder',
(int) 44 => 'Lung',
(int) 45 => 'Lung',
(int) 46 => 'Ovary',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Brain',
(int) 94 => 'Breast',
(int) 95 => 'Colon',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Lung',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Muscle',
(int) 111 => 'Placenta',
(int) 112 => 'Adipose',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Liver',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Muscle',
(int) 145 => 'Ovary',
(int) 146 => 'Placenta',
(int) 147 => 'Testis',
(int) 148 => 'Kidney',
(int) 149 => 'Adipose',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Liver',
(int) 153 => 'Adrenal',
(int) 154 => 'Brain',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Ovary',
(int) 161 => 'Testis'
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038268' => array(
[maximum depth reached]
),
'ENSMUSG00000038290' => array(
[maximum depth reached]
),
'ENSMUSG00000043099' => array(
[maximum depth reached]
),
'ENSMUSG00000045287' => array(
[maximum depth reached]
),
'ENSMUSG00000065537' => array(
[maximum depth reached]
),
'ENSMUSG00000065590' => array(
[maximum depth reached]
),
'ENSMUSG00000078789' => array(
[maximum depth reached]
),
'ENSMUSG00000082481' => array(
[maximum depth reached]
),
'ENSMUSG00000085738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Muscle',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Brain',
(int) 44 => 'Breast',
(int) 45 => 'Colon',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Breast',
(int) 86 => 'Ovary',
(int) 87 => 'Ovary',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Bladder',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000070366' => 'SMG6 nonsense mediated mRNA decay factor',
'ENSG00000108963' => 'diphthamide biosynthesis 1',
'ENSG00000177374' => 'hypermethylated in cancer 1',
'ENSG00000185924' => 'reticulon 4 receptor-like 1',
'ENSG00000228133' => null,
'ENSG00000262402' => null,
'ENSG00000262445' => null,
'ENSG00000262533' => null,
'ENSG00000262664' => 'ovarian tumor suppressor candidate 2',
'ENSG00000262810' => null,
'ENSG00000262869' => null,
'ENSG00000263050' => null,
'ENSG00000265777' => 'RNA, 7SL, cytoplasmic 624, pseudogene',
'ENSG00000267195' => 'microRNA 212',
'ENSG00000267200' => 'microRNA 132',
'ENSG00000279040' => null,
'ENSG00000279340' => null,
'ENSG00000279562' => null,
'ENSG00000280333' => null,
'ENSMUSG00000038268' => 'candidate tumor suppressor in ovarian cancer 2',
'ENSMUSG00000038290' => 'Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)',
'ENSMUSG00000043099' => 'hypermethylated in cancer 1',
'ENSMUSG00000045287' => 'reticulon 4 receptor-like 1',
'ENSMUSG00000065537' => 'microRNA 132',
'ENSMUSG00000065590' => 'microRNA 212',
'ENSMUSG00000078789' => 'DPH1 homolog (S. cerevisiae)',
'ENSMUSG00000082481' => 'ribosomal protein S12, pseudogene 19',
'ENSMUSG00000085609' => 'RIKEN cDNA 1700016P03 gene',
'ENSMUSG00000085738' => 'predicted gene 12335',
'ENSMUSG00000085765' => 'predicted gene 12333'
)
$gene_name_arr = array(
'ENSG00000070366' => 'SMG6',
'ENSG00000108963' => 'DPH1',
'ENSG00000177374' => 'HIC1',
'ENSG00000185924' => 'RTN4RL1',
'ENSG00000228133' => 'AC099684.1',
'ENSG00000262402' => 'RP11-667K14.8',
'ENSG00000262445' => 'CTD-2545H1.2',
'ENSG00000262533' => 'RP11-667K14.4',
'ENSG00000262664' => 'OVCA2',
'ENSG00000262810' => 'RP11-667K14.5',
'ENSG00000262869' => 'CTD-2545H1.1',
'ENSG00000263050' => 'RP11-667K14.3',
'ENSG00000265777' => 'RN7SL624P',
'ENSG00000267195' => 'MIR212',
'ENSG00000267200' => 'MIR132',
'ENSG00000279040' => 'RP11-667K14.13',
'ENSG00000279340' => 'RP11-667K14.9',
'ENSG00000279562' => 'RP11-667K14.10',
'ENSG00000280333' => 'RP11-667K14.14',
'ENSMUSG00000038268' => 'Ovca2',
'ENSMUSG00000038290' => 'Smg6',
'ENSMUSG00000043099' => 'Hic1',
'ENSMUSG00000045287' => 'Rtn4rl1',
'ENSMUSG00000065537' => 'Mir132',
'ENSMUSG00000065590' => 'Mir212',
'ENSMUSG00000078789' => 'Dph1',
'ENSMUSG00000082481' => 'Rps12-ps19',
'ENSMUSG00000085609' => '1700016P03Rik',
'ENSMUSG00000085738' => 'Gm12335',
'ENSMUSG00000085765' => 'Gm12333'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0001',
'tax_id' => '9606',
'chromosome' => '17',
'seq_start' => '1996571',
'seq_end' => '2212289',
'region_length' => '215718',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '75016990',
'seq_end' => '75215448',
'region_length' => '198458',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '25126322',
'seq_end' => '25126635',
'region_length' => '313',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 46 => 'Brain',
(int) 68 => 'Breast',
(int) 92 => 'Colon',
(int) 113 => 'Heart',
(int) 133 => 'Kidney',
(int) 152 => 'Liver',
(int) 171 => 'Lung',
(int) 187 => 'Muscle',
(int) 203 => 'Ovary',
(int) 233 => 'Placenta',
(int) 254 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 83
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263073' => array(
'start' => '2059843',
'end' => '2303771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-001'
),
'ENST00000354901' => array(
'start' => '2059850',
'end' => '2266199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-002'
),
'ENST00000536871' => array(
'start' => '2061405',
'end' => '2237037',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-005'
),
'ENST00000570606' => array(
'start' => '2186725',
'end' => '2266131',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-021'
),
'ENST00000570659' => array(
'start' => '2172802',
'end' => '2244912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-019'
),
'ENST00000570668' => array(
'start' => '2186737',
'end' => '2240191',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-013'
),
'ENST00000570756' => array(
'start' => '2059876',
'end' => '2082310',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-004'
),
'ENST00000570874' => array(
'start' => '2085783',
'end' => '2173071',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-011'
),
'ENST00000571442' => array(
'start' => '2172797',
'end' => '2237391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-015'
),
'ENST00000572205' => array(
'start' => '2172737',
'end' => '2229464',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-018'
),
'ENST00000572369' => array(
'start' => '2172668',
'end' => '2214349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-008'
),
'ENST00000573153' => array(
'start' => '2061452',
'end' => '2066089',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-012'
),
'ENST00000573166' => array(
'start' => '2059846',
'end' => '2088761',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-003'
),
'ENST00000573827' => array(
'start' => '2061551',
'end' => '2072003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-023'
),
'ENST00000574501' => array(
'start' => '2059839',
'end' => '2062257',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SMG6-022'
),
'ENST00000575176' => array(
'start' => '2172712',
'end' => '2212737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-009'
),
'ENST00000575338' => array(
'start' => '2081916',
'end' => '2095112',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-007'
),
'ENST00000575454' => array(
'start' => '2068887',
'end' => '2173178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-010'
),
'ENST00000575663' => array(
'start' => '2172804',
'end' => '2237580',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SMG6-014'
),
'ENST00000576218' => array(
'start' => '2061374',
'end' => '2082301',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SMG6-020'
),
'ENST00000263083' => array(
'start' => '2030110',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-001'
),
'ENST00000263084' => array(
'start' => '2041553',
'end' => '2042628',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-019'
),
'ENST00000570477' => array(
'start' => '2033393',
'end' => '2042965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-003'
),
'ENST00000570833' => array(
'start' => '2033820',
'end' => '2039787',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-014'
),
'ENST00000570867' => array(
'start' => '2038965',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-005'
),
'ENST00000571418' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-007'
),
'ENST00000571710' => array(
'start' => '2040340',
'end' => '2043424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-009'
),
'ENST00000572214' => array(
'start' => '2036895',
'end' => '2042703',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-013'
),
'ENST00000572248' => array(
'start' => '2041281',
'end' => '2042690',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-016'
),
'ENST00000572684' => array(
'start' => '2040672',
'end' => '2043424',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-006'
),
'ENST00000572819' => array(
'start' => '2030167',
'end' => '2037181',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-011'
),
'ENST00000575162' => array(
'start' => '2041534',
'end' => '2042919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-017'
),
'ENST00000575667' => array(
'start' => '2030159',
'end' => '2043024',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DPH1-002'
),
'ENST00000575998' => array(
'start' => '2039553',
'end' => '2040481',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-012'
),
'ENST00000576129' => array(
'start' => '2030186',
'end' => '2037283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DPH1-015'
),
'ENST00000576891' => array(
'start' => '2034886',
'end' => '2036956',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DPH1-010'
),
'ENST00000607788' => array(
'start' => '2041102',
'end' => '2043421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DPH1-018'
),
'ENST00000322941' => array(
'start' => '2056310',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-005'
),
'ENST00000399849' => array(
'start' => '2055099',
'end' => '2059686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-201'
),
'ENST00000571875' => array(
'start' => '2054215',
'end' => '2056889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-002'
),
'ENST00000571990' => array(
'start' => '2054215',
'end' => '2056979',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-003'
),
'ENST00000574370' => array(
'start' => '2054154',
'end' => '2056719',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-001'
),
'ENST00000576444' => array(
'start' => '2056219',
'end' => '2056943',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-004'
),
'ENST00000619757' => array(
'start' => '2055099',
'end' => '2063241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HIC1-006'
),
'ENST00000331238' => array(
'start' => '1934677',
'end' => '2025345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RTN4RL1-001'
),
'ENST00000425277' => array(
'start' => '2017883',
'end' => '2020706',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-001'
),
'ENST00000572287' => array(
'start' => '2017716',
'end' => '2019102',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC099684.1-002'
),
'ENST00000573670' => array(
'start' => '2127430',
'end' => '2127904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-667K14.8-001'
),
'ENST00000574520' => array(
'start' => '1995614',
'end' => '2003671',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2545H1.2-001'
),
'ENST00000572404' => array(
'start' => '2042900',
'end' => '2043425',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.4-001'
),
'ENST00000572195' => array(
'start' => '2041936',
'end' => '2043430',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OVCA2-001'
),
'ENST00000571815' => array(
'start' => '2089681',
'end' => '2101560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-667K14.5-001'
),
'ENST00000574483' => array(
'start' => '2019952',
'end' => '2023664',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2545H1.1-001'
),
'ENST00000572790' => array(
'start' => '2043475',
'end' => '2044968',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-667K14.3-001'
),
'ENST00000580297' => array(
'start' => '2199762',
'end' => '2200039',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL624P-201'
),
'ENST00000586026' => array(
'start' => '2050271',
'end' => '2050380',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR212-201'
),
'ENST00000591554' => array(
'start' => '2049908',
'end' => '2050008',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR132-201'
),
'ENST00000623952' => array(
'start' => '2101542',
'end' => '2101667',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.13-001'
),
'ENST00000623339' => array(
'start' => '2122342',
'end' => '2122508',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.9-001'
),
'ENST00000623751' => array(
'start' => '2117626',
'end' => '2117772',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.10-001'
),
'ENST00000624308' => array(
'start' => '2072823',
'end' => '2072956',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-667K14.14-001'
),
'ENSMUST00000071562' => array(
'start' => '75175942',
'end' => '75178835',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ovca2-001'
),
'ENSMUST00000123489' => array(
'start' => '75177801',
'end' => '75178787',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ovca2-002'
),
'ENSMUST00000045281' => array(
'start' => '74925823',
'end' => '75164448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-001'
),
'ENSMUST00000130145' => array(
'start' => '74930520',
'end' => '75164448',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Smg6-003'
),
'ENSMUST00000135522' => array(
'start' => '74989361',
'end' => '74992206',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Smg6-002'
),
'ENSMUST00000140197' => array(
'start' => '74993853',
'end' => '75139369',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Smg6-004'
),
'ENSMUST00000142038' => array(
'start' => '75132435',
'end' => '75139369',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-005'
),
'ENSMUST00000153226' => array(
'start' => '75159633',
'end' => '75163182',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Smg6-006'
),
'ENSMUST00000055619' => array(
'start' => '75164565',
'end' => '75169519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hic1-001'
),
'ENSMUST00000131720' => array(
'start' => '75167153',
'end' => '75168146',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Hic1-002'
),
'ENSMUST00000102514' => array(
'start' => '75193783',
'end' => '75267769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rtn4rl1-001'
),
'ENSMUST00000083603' => array(
'start' => '75173665',
'end' => '75173765',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir132-201'
),
'ENSMUST00000083656' => array(
'start' => '75173388',
'end' => '75173478',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir212-201'
),
'ENSMUST00000044949' => array(
'start' => '75177643',
'end' => '75190519',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-001'
),
'ENSMUST00000139958' => array(
'start' => '75180825',
'end' => '75191241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dph1-002'
),
'ENSMUST00000148944' => array(
'start' => '75179189',
'end' => '75183515',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-005'
),
'ENSMUST00000150910' => array(
'start' => '75178296',
'end' => '75181312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dph1-003'
),
'ENSMUST00000156489' => array(
'start' => '75177696',
'end' => '75183323',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dph1-004'
),
'ENSMUST00000119773' => array(
'start' => '75070814',
'end' => '75071213',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps19-001'
),
'ENSMUST00000134252' => array(
'start' => '75172560',
'end' => '75177633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1700016P03Rik-001'
),
'ENSMUST00000119738' => array(
'start' => '75066436',
'end' => '75066762',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12335-001'
),
'ENSMUST00000155508' => array(
'start' => '75036476',
'end' => '75039348',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12333-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KQ_0001' => array(
'genes_in_region' => array(
'ENSG00000070366' => array(
[maximum depth reached]
),
'ENSG00000108963' => array(
[maximum depth reached]
),
'ENSG00000185924' => array(
[maximum depth reached]
),
'ENSG00000228133' => array(
[maximum depth reached]
),
'ENSG00000262402' => array(
[maximum depth reached]
),
'ENSG00000262445' => array(
[maximum depth reached]
),
'ENSG00000262533' => array(
[maximum depth reached]
),
'ENSG00000262664' => array(
[maximum depth reached]
),
'ENSG00000262810' => array(
[maximum depth reached]
),
'ENSG00000262869' => array(
[maximum depth reached]
),
'ENSG00000263050' => array(
[maximum depth reached]
),
'ENSG00000265777' => array(
[maximum depth reached]
),
'ENSG00000267200' => array(
[maximum depth reached]
),
'ENSG00000279040' => array(
[maximum depth reached]
),
'ENSG00000279340' => array(
[maximum depth reached]
),
'ENSG00000280333' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Lung',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Adipose',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Ovary',
(int) 32 => 'Bladder',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Placenta',
(int) 43 => 'Bladder',
(int) 44 => 'Lung',
(int) 45 => 'Lung',
(int) 46 => 'Ovary',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Lung',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Brain',
(int) 94 => 'Breast',
(int) 95 => 'Colon',
(int) 96 => 'Heart',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Lung',
(int) 100 => 'Muscle',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Muscle',
(int) 111 => 'Placenta',
(int) 112 => 'Adipose',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Liver',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Muscle',
(int) 145 => 'Ovary',
(int) 146 => 'Placenta',
(int) 147 => 'Testis',
(int) 148 => 'Kidney',
(int) 149 => 'Adipose',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Liver',
(int) 153 => 'Adrenal',
(int) 154 => 'Brain',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Ovary',
(int) 161 => 'Testis'
)
),
'CIL_0007KQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038268' => array(
[maximum depth reached]
),
'ENSMUSG00000038290' => array(
[maximum depth reached]
),
'ENSMUSG00000043099' => array(
[maximum depth reached]
),
'ENSMUSG00000045287' => array(
[maximum depth reached]
),
'ENSMUSG00000065537' => array(
[maximum depth reached]
),
'ENSMUSG00000065590' => array(
[maximum depth reached]
),
'ENSMUSG00000078789' => array(
[maximum depth reached]
),
'ENSMUSG00000082481' => array(
[maximum depth reached]
),
'ENSMUSG00000085738' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Muscle',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Brain',
(int) 44 => 'Breast',
(int) 45 => 'Colon',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Breast',
(int) 86 => 'Ovary',
(int) 87 => 'Ovary',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Bladder',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KQ_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '25126322',
'seq_end' => '25126635',
'region_length' => '313',
'region_type' => 'UCNEbase',
'el_id' => 'DPH1'
)
)
$gene_el = array(
'ENSMUST00000119738' => array(
'Adipose' => array(
'average_FPKM' => '0.705',
'stddev_FPKM' => '0.24'
),
'Adrenal' => array(
'average_FPKM' => '0.654',
'stddev_FPKM' => '0.07'
),
'Bladder' => array(
'average_FPKM' => '0.776',
'stddev_FPKM' => '0.18'
),
'Brain' => array(
'average_FPKM' => '0.830',
'stddev_FPKM' => '0.08'
),
'Breast' => array(
'average_FPKM' => '0.709',
'stddev_FPKM' => '0.37'
),
'Colon' => array(
'average_FPKM' => '1.131',
'stddev_FPKM' => '0.68'
),
'Heart' => array(
'average_FPKM' => '0.438',
'stddev_FPKM' => '0.22'
),
'Kidney' => array(
'average_FPKM' => '1.174',
'stddev_FPKM' => '0.75'
),
'Liver' => array(
'average_FPKM' => '0.445',
'stddev_FPKM' => '0.21'
),
'Lung' => array(
'average_FPKM' => '0.538',
'stddev_FPKM' => '0.19'
),
'Ovary' => array(
'average_FPKM' => '0.812',
'stddev_FPKM' => '0.46'
),
'Placenta' => array(
'average_FPKM' => '0.605',
'stddev_FPKM' => '0.43'
),
'Testis' => array(
'average_FPKM' => '0.396',
'stddev_FPKM' => '0.35'
)
)
)
$gene_key = 'ENSMUSG00000085738'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.705',
'stddev_FPKM' => '0.24'
),
'Adrenal' => array(
'average_FPKM' => '0.654',
'stddev_FPKM' => '0.07'
),
'Bladder' => array(
'average_FPKM' => '0.776',
'stddev_FPKM' => '0.18'
),
'Brain' => array(
'average_FPKM' => '0.830',
'stddev_FPKM' => '0.08'
),
'Breast' => array(
'average_FPKM' => '0.709',
'stddev_FPKM' => '0.37'
),
'Colon' => array(
'average_FPKM' => '1.131',
'stddev_FPKM' => '0.68'
),
'Heart' => array(
'average_FPKM' => '0.438',
'stddev_FPKM' => '0.22'
),
'Kidney' => array(
'average_FPKM' => '1.174',
'stddev_FPKM' => '0.75'
),
'Liver' => array(
'average_FPKM' => '0.445',
'stddev_FPKM' => '0.21'
),
'Lung' => array(
'average_FPKM' => '0.538',
'stddev_FPKM' => '0.19'
),
'Ovary' => array(
'average_FPKM' => '0.812',
'stddev_FPKM' => '0.46'
),
'Placenta' => array(
'average_FPKM' => '0.605',
'stddev_FPKM' => '0.43'
),
'Testis' => array(
'average_FPKM' => '0.396',
'stddev_FPKM' => '0.35'
)
)
$tran_key = 'ENSMUST00000119738'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SMG6)