C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, epsilon (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293780 CHRNE-001 ENSG00000108556 9606 - 17:4897774-4903074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000293780
Transcript ID Liver
ENST00000293780 3.470±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RG CIL_0001RG_0001 CGP 17:4807096-4898061
CIL_0001R8 CIL_0001R8_0001 CGP 17:4833388-4903074
CIL_0000P4 CIL_0000P4_0001 CGP 17:4897774-4903074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005892 TAS acetylcholine-gated channel complex
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0006936 TAS muscle contraction
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0007271 TAS synaptic transmission, cholinergic
GO:0008324 TAS cation transmembrane transporter activity
GO:0015464 TAS acetylcholine receptor activity
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0042391 IEA regulation of membrane potential
GO:0045211 IEA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102556 Chrne-001 protein_coding Mus_musculus 0 1330
ENSMUST00000014753 Chrne-002 protein_coding Mus_musculus 0 1321
ENSMUST00000136663 Mink1-004 protein_coding Mus_musculus 0 220
ENSMUST00000079244 Mink1-003 protein_coding Mus_musculus 0 220
ENSMUST00000072237 Mink1-201 protein_coding Mus_musculus 0 219
ENSMUST00000102559 Mink1-007 protein_coding Mus_musculus 0 213
ENSMUST00000186038 Chrng-003 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000027470 Chrng-001 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000185763 Chrng-002 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000189392 Chrng-004 retained_intron Mus_musculus 0.00000002 66

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