C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA isopentenyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102649 Trit1-001 ENSMUSG00000028653 10090 + 4:123016597-123054949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102649 2.136±0.47 0.745±0.00 4.214±0.47 2.594±0.05 1.878±0.65 0.964±0.29 0.369±0.18 0.582±0.20 1.882±0.69 1.279±0.91 1.914±0.58 3.385±0.47 2.822±0.55 0.581±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0046872 IEA metal ion binding
GO:0052381 IEA tRNA dimethylallyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316891 TRIT1-001 protein_coding Homo_sapiens 0 1831
ENST00000372818 TRIT1-002 protein_coding Homo_sapiens 0 1136
ENST00000441669 TRIT1-003 protein_coding Homo_sapiens 0 1317
ENST00000462243 TRIT1-010 retained_intron Homo_sapiens 0 483
ENST00000462797 TRIT1-004 nonsense_mediated_decay Homo_sapiens 0 1269
ENST00000465417 TRIT1-012 processed_transcript Homo_sapiens 0 475
ENST00000467774 TRIT1-011 retained_intron Homo_sapiens 0 315
ENST00000469476 TRIT1-008 nonsense_mediated_decay Homo_sapiens 0 737
ENST00000486825 TRIT1-007 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000489945 TRIT1-006 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000491865 TRIT1-013 processed_transcript Homo_sapiens 0 542
ENST00000492612 TRIT1-009 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000495175 TRIT1-005 nonsense_mediated_decay Homo_sapiens 0 1013
ENST00000537440 TRIT1-201 protein_coding Homo_sapiens 0 959

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