C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479446 ABCA2-009 ENSG00000107331 9606 - 9:137007242-137018219 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungMuscleOvaryPlacentaTestisENST00000479446
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Muscle Ovary Placenta Testis
ENST00000479446 1.797±0.00 1.675±0.00 61.668±0.00 3.613±0.00 3.985±0.00 0.247±0.00 0.363±0.00 3.697±1.55 1.378±0.40 2.527±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102919 Abca2-001 protein_coding Mus_musculus 0 5049
ENSMUST00000125520 Abca2-007 processed_transcript Mus_musculus 0 680
ENSMUST00000149385 Abca2-004 processed_transcript Mus_musculus 0 545
ENSMUST00000143075 Abca2-003 processed_transcript Mus_musculus 0 481
ENSMUST00000144560 Abca2-005 processed_transcript Mus_musculus 0 472
ENSMUST00000150550 Abca2-002 processed_transcript Mus_musculus 0 399
ENSMUST00000141065 Abca2-006 processed_transcript Mus_musculus 0 339
ENSMUST00000171637 Abca7-202 protein_coding Mus_musculus 5e-38 165
ENSMUST00000043866 Abca7-201 protein_coding Mus_musculus 5e-38 165
ENSMUST00000132517 Abca7-001 protein_coding Mus_musculus 5e-38 165

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