C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H4n
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102979 Hist1h4n-001 ENSMUSG00000069305 10090 - 13:21831767-21832196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102979 1.341±0.44 0.243±0.15 1.102±0.33 7.759±7.22 1.091±0.48 2.719±0.95 0.940±0.09 0.285±0.11 5.545±14.39 1.131±0.46 0.307±0.08 2.047±1.42 1.099±0.80 2.445±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 ISS nucleosome
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006334 ISS nucleosome assembly
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126439 protein_coding Danio_rerio 0 316
ENSDART00000128059 protein_coding Danio_rerio 0 311
ENSDART00000112685 si:ch211-113a14.10-201 protein_coding Danio_rerio 0 294
ENST00000355057 HIST1H4J-001 protein_coding Homo_sapiens 0 407
ENST00000377745 HIST1H4B-001 protein_coding Homo_sapiens 0 302
ENST00000578186 HIST2H4A-004 protein_coding Homo_sapiens 0 329
ENST00000579512 HIST2H4B-004 protein_coding Homo_sapiens 0 329
ENST00000611927 HIST1H4K-001 protein_coding Homo_sapiens 0 403
ENST00000612061 HIST2H4B-002 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000613412 HIST2H4A-002 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000614272 HIST2H4A-003 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000615353 HIST1H4I-001 protein_coding Homo_sapiens 0 412
ENST00000618193 HIST2H4A-001 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000618305 HIST1H4L-001 protein_coding Homo_sapiens 0 351
ENST00000621520 HIST2H4B-003 nonsense_mediated_decay Homo_sapiens 0 329

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