C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 2, H4b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579512 HIST2H4B-004 ENSG00000270276 9606 - 1:149860079-149861210 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLiverLungMuscleTestisENST00000579512
Transcript ID Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Testis
ENST00000579512 0.069±0.00 0.072±0.00 0.040±0.00 0.232±0.00 0.150±0.00 0.310±0.00 0.302±0.00 0.031±0.00 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0004 CGP 1:149842188-149886652
CIL_0000UC CIL_0000UC_0005 CGP 1:149842204-149886652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000723 TAS telomere maintenance
GO:0000786 TAS:IEA nucleosome
GO:0003677 TAS:IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016020 IDA membrane
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035574 TAS histone H4-K20 demethylation
GO:0035575 TAS histone demethylase activity (H4-K20 specific)
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045653 IDA negative regulation of megakaryocyte differentiation
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171473 Hist2h4-001 protein_coding Mus_musculus 0 392
ENSMUST00000087714 Hist1h4j-001 protein_coding Mus_musculus 0 361
ENSMUST00000102983 Hist1h4k-001 protein_coding Mus_musculus 0 353
ENSMUST00000102964 Hist1h4a-001 protein_coding Mus_musculus 0 344
ENSMUST00000102965 Hist1h4b-001 protein_coding Mus_musculus 0 342
ENSMUST00000102972 Hist1h4h-001 protein_coding Mus_musculus 0 342
ENSMUST00000102977 Hist1h4i-001 protein_coding Mus_musculus 0 337
ENSMUST00000102971 Hist1h4f-001 protein_coding Mus_musculus 0 333
ENSMUST00000104941 Hist1h4m-001 protein_coding Mus_musculus 0 331
ENSMUST00000102979 Hist1h4n-001 protein_coding Mus_musculus 0 329
ENSMUST00000102967 Hist1h4c-001 protein_coding Mus_musculus 0 316
ENSMUST00000179285 Hist4h4-201 protein_coding Mus_musculus 0 315

Loading