C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2',3'-cyclic nucleotide 3' phosphodiesterase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103120 Cnp-001 ENSMUSG00000006782 10090 + 11:100574904-100581728 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryENSMUST00000103120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000103120 20.735±4.04 28.706±3.82 23.397±2.08 51.046±0.00 33.397±11.04 23.831±1.56 9.898±1.45 10.413±1.70 24.203±0.92 9.029±0.00 28.320±3.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KT CIL_0000KT_0003 CGP 11:100545607-100591729
CIL_0006EX CIL_0006EX_0002 CGP 11:100574904-100620168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0003723 IEA RNA binding
GO:0004113 IDA 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0007409 IMP axonogenesis
GO:0007568 IEA aging
GO:0008344 IMP adult locomotory behavior
GO:0009214 IEA cyclic nucleotide catabolic process
GO:0009636 IDA response to toxic substance
GO:0016020 IDA membrane
GO:0021762 IEA substantia nigra development
GO:0030551 IEA cyclic nucleotide binding
GO:0030900 IEA forebrain development
GO:0031143 IEA pseudopodium
GO:0032496 IEA response to lipopolysaccharide
GO:0035748 IEA myelin sheath abaxonal region
GO:0035749 IEA myelin sheath adaxonal region
GO:0042995 IEA cell projection
GO:0043209 IDA myelin sheath
GO:0046902 IEA regulation of mitochondrial membrane permeability
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048709 IMP oligodendrocyte differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393888 CNP-002 protein_coding Homo_sapiens 0 1369
ENST00000393892 CNP-001 protein_coding Homo_sapiens 0 1411
ENST00000441615 CNP-004 protein_coding Homo_sapiens 0 562
ENST00000585452 CNP-011 protein_coding Homo_sapiens 0 601
ENST00000587679 CNP-010 protein_coding Homo_sapiens 0 604

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