C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103204 Per3-001 ENSMUSG00000028957 10090 - 4:151003652-151044665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103204 3.057±0.75 2.958±1.42 10.141±0.33 1.252±1.04 2.394±0.60 1.573±0.44 1.898±0.13 2.232±0.70 0.614±0.20 2.516±0.82 3.084±1.74 3.736±1.65 0.439±0.25 0.756±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007623 IDA circadian rhythm
GO:0019900 IPI kinase binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032922 IEA circadian regulation of gene expression
GO:0045187 ISS regulation of circadian sleep/wake cycle, sleep

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361923 PER3-002 protein_coding Homo_sapiens 0 1500
ENST00000377532 PER3-001 protein_coding Homo_sapiens 0 1443
ENST00000377541 PER3-003 protein_coding Homo_sapiens 0 998
ENST00000463106 PER3-006 retained_intron Homo_sapiens 0 298
ENST00000473653 PER3-005 retained_intron Homo_sapiens 0 215
ENST00000602883 PER3-007 retained_intron Homo_sapiens 0 213
ENST00000613533 PER3-201 protein_coding Homo_sapiens 0 1443
ENST00000614998 PER3-202 protein_coding Homo_sapiens 0 1439

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