C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105510 Hdac2-002 ENSMUSG00000019777 10090 + 10:36974570-36996111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverLungOvaryENSMUST00000105510
Transcript ID Adipose Breast Liver Lung Ovary
ENSMUST00000105510 1.468±0.76 0.654±0.11 0.334±0.00 0.973±0.10 1.946±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P5 CIL_0007P5_000A UCNEbase 10:36379394-37135425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0004407 IEA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005667 IPI transcription factor complex
GO:0016575 IGI histone deacetylation
GO:0017053 IPI transcriptional repressor complex
GO:0021766 IGI hippocampus development
GO:0030182 IGI neuron differentiation
GO:0031490 IDA chromatin DNA binding
GO:0048714 IGI positive regulation of oligodendrocyte differentiation
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051896 IMP regulation of protein kinase B signaling
GO:0055013 IMP cardiac muscle cell development
GO:0060044 IMP negative regulation of cardiac muscle cell proliferation
GO:0060297 IMP regulation of sarcomere organization
GO:0090090 IGI negative regulation of canonical Wnt signaling pathway
GO:0090311 IGI regulation of protein deacetylation
GO:2001243 IGI negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368632 HDAC2-003 protein_coding Homo_sapiens 0 1074
ENST00000425835 HDAC2-002 protein_coding Homo_sapiens 0 660
ENST00000518690 HDAC2-006 protein_coding Homo_sapiens 0 368
ENST00000518756 HDAC2-016 retained_intron Homo_sapiens 0 326
ENST00000519065 HDAC2-001 protein_coding Homo_sapiens 0 1166
ENST00000519108 HDAC2-004 protein_coding Homo_sapiens 0 1075
ENST00000520170 HDAC2-013 retained_intron Homo_sapiens 0 263
ENST00000520895 HDAC2-010 protein_coding Homo_sapiens 0 318
ENST00000521163 HDAC2-015 protein_coding Homo_sapiens 0 374
ENST00000521233 HDAC2-014 retained_intron Homo_sapiens 0 431
ENST00000521610 HDAC2-008 protein_coding Homo_sapiens 0 484
ENST00000522371 HDAC2-012 protein_coding Homo_sapiens 0 429
ENST00000523240 HDAC2-007 protein_coding Homo_sapiens 0 346
ENST00000523334 HDAC2-005 retained_intron Homo_sapiens 0 527
ENST00000523628 HDAC2-011 protein_coding Homo_sapiens 0 501
ENST00000524334 HDAC2-009 protein_coding Homo_sapiens 0 285

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