C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000291386 SSU72-001 ENSG00000160075 9606 - 1:1541673-1574869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291386 57.433±0.00 82.192±0.00 10.574±0.00 53.583±28.33 44.427±31.78 36.697±22.51 30.098±22.34 46.327±29.40 26.074±15.84 32.500±21.78 71.889±36.82 77.259±42.57 72.497±4.06 54.677±13.69

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 IMP mRNA polyadenylation
GO:0006397 IEA mRNA processing
GO:0008420 IDA CTD phosphatase activity
GO:0070940 IDA dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030905 Ssu72-001 protein_coding Mus_musculus 0 804
ENSMUST00000105595 Ssu72-002 protein_coding Mus_musculus 0 654
ENSMUST00000117453 Gm15422-001 processed_pseudogene Mus_musculus 0 462
ENSDART00000041895 ssu72-001 protein_coding Danio_rerio 0 435
ENSMUST00000140322 Ssu72-003 retained_intron Mus_musculus 0 322
ENSMUST00000178987 1500002C15Rik-001 protein_coding Mus_musculus 3e-34 150

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