C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105853 Srsf10-001 ENSMUSG00000028676 10090 + 4:135855747-135865815 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105853
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105853 6.099±1.97 9.066±1.25 15.877±11.32 3.453±0.64 3.204±0.93 2.224±0.17 10.190±7.95 5.484±1.27 3.326±0.50 12.090±0.94 10.053±4.72 8.389±3.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 NAS RNA binding
GO:0005515 IEA protein binding
GO:0005654 IDA nucleoplasm
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006376 ISS mRNA splice site selection
GO:0006406 NAS mRNA export from nucleus
GO:0016482 IDA cytoplasmic transport
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338597 SRSF10-008 processed_transcript Homo_sapiens 0 1149
ENST00000341154 SRSF10-004 processed_transcript Homo_sapiens 0 398
ENST00000343255 SRSF10-003 protein_coding Homo_sapiens 0 1978
ENST00000344989 SRSF10-002 protein_coding Homo_sapiens 0 737
ENST00000374452 SRSF10-006 protein_coding Homo_sapiens 0 723
ENST00000374453 SRSF10-014 protein_coding Homo_sapiens 0 688
ENST00000400616 RP5-836E8.1-001 processed_pseudogene Homo_sapiens 0 438
ENST00000453840 SRSF10-005 protein_coding Homo_sapiens 0 691
ENST00000473754 SRSF10-016 processed_transcript Homo_sapiens 0 398
ENST00000473858 SRSF10-015 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000484146 SRSF10-017 protein_coding Homo_sapiens 0 640
ENST00000485292 SRSF10-010 processed_transcript Homo_sapiens 0 294
ENST00000485841 SRSF10-007 retained_intron Homo_sapiens 0 1707
ENST00000492112 SRSF10-001 protein_coding Homo_sapiens 0 1999
ENST00000495785 SRSF10-012 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000503825 RP11-777B9.1-001 processed_pseudogene Homo_sapiens 0 813
ENST00000504053 RP11-5N11.1-001 transcribed_processed_pseudogene Homo_sapiens 0 525
ENST00000555494 CTD-2325K12.1-001 transcribed_processed_pseudogene Homo_sapiens 0 867
ENST00000588646 SRSF10P1-001 processed_pseudogene Homo_sapiens 0 682
ENST00000600311 CTD-2325K12.1-002 processed_transcript Homo_sapiens 0 1411

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