C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344989 SRSF10-002 ENSG00000188529 9606 - 1:23964804-23980331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344989
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344989 1.938±0.25 2.882±0.56 5.420±0.00 0.892±0.14 3.995±1.76 1.459±0.51 3.097±0.00 1.018±0.00 5.936±1.29 2.433±0.61 5.610±1.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000244 NAS spliceosomal tri-snRNP complex assembly
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 NAS cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006376 IDA mRNA splice site selection
GO:0006406 NAS mRNA export from nucleus
GO:0016482 IDA cytoplasmic transport
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0050733 NAS RS domain binding
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126641 Srsf10-002 protein_coding Mus_musculus 0 1912
ENSMUST00000102544 Srsf10-004 protein_coding Mus_musculus 0 1808
ENSMUST00000030438 Srsf10-005 processed_transcript Mus_musculus 0 1489
ENSMUST00000105853 Srsf10-001 protein_coding Mus_musculus 0 737
ENSMUST00000097844 Srsf10-003 protein_coding Mus_musculus 0 717
ENSMUST00000091762 Gm5446-201 processed_pseudogene Mus_musculus 0 614
ENSMUST00000149878 Srsf10-008 processed_transcript Mus_musculus 0 418
ENSMUST00000129198 Srsf10-009 processed_transcript Mus_musculus 0 339
ENSMUST00000129718 Srsf10-007 processed_transcript Mus_musculus 0 294
ENSMUST00000154447 Srsf10-006 processed_transcript Mus_musculus 0 294
ENSMUST00000142002 Srsf10-010 processed_transcript Mus_musculus 1e-17 97

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