C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453840 SRSF10-005 ENSG00000188529 9606 - 1:23966445-23980296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000453840
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000453840 6.752±0.00 8.146±0.00 7.012±0.00 4.827±0.00 4.678±0.00 11.732±0.00 7.007±0.00 4.434±0.00 1.659±0.29 9.513±2.34 6.646±0.50 13.087±1.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000244 NAS spliceosomal tri-snRNP complex assembly
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 NAS cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006376 IDA mRNA splice site selection
GO:0006406 NAS mRNA export from nucleus
GO:0016482 IDA cytoplasmic transport
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0050733 NAS RS domain binding
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102544 Srsf10-004 protein_coding Mus_musculus 0 1796
ENSMUST00000126641 Srsf10-002 protein_coding Mus_musculus 0 1783
ENSMUST00000030438 Srsf10-005 processed_transcript Mus_musculus 0 1471
ENSMUST00000097844 Srsf10-003 protein_coding Mus_musculus 0 704
ENSMUST00000105853 Srsf10-001 protein_coding Mus_musculus 0 691
ENSMUST00000091762 Gm5446-201 processed_pseudogene Mus_musculus 0 627
ENSMUST00000149878 Srsf10-008 processed_transcript Mus_musculus 0 398
ENSMUST00000129198 Srsf10-009 processed_transcript Mus_musculus 0 353
ENSMUST00000129718 Srsf10-007 processed_transcript Mus_musculus 0 268
ENSMUST00000154447 Srsf10-006 processed_transcript Mus_musculus 0 268
ENSMUST00000142002 Srsf10-010 processed_transcript Mus_musculus 2e-16 92

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