C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263974 TAF12-001 ENSG00000120656 9606 - 1:28603101-28643005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263974
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263974 6.194±0.00 4.885±0.00 1.421±1.10 7.974±0.00 8.862±0.00 6.393±0.00 8.892±0.00 4.933±0.00 5.573±0.00 10.218±0.00 7.640±2.60 6.937±1.09 14.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892
CIL_0001X2 CIL_0001X2_0001 CGP 1:28589323-28643085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000125 IDA PCAF complex
GO:0003677 IDA:IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA:IEA transcription factor TFIID complex
GO:0006325 TAS chromatin organization
GO:0006352 IDA:IEA DNA-templated transcription, initiation
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043565 IEA sequence-specific DNA binding
GO:0043966 IDA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030731 Taf12-001 protein_coding Mus_musculus 0 1291
ENSMUST00000105963 Taf12-003 protein_coding Mus_musculus 0 841
ENSDART00000123639 taf12-202 protein_coding Danio_rerio 0 243
ENSDART00000076222 taf12-201 protein_coding Danio_rerio 0 243
ENSDART00000154222 taf12-004 retained_intron Danio_rerio 0 243
ENSDART00000155673 taf12-002 protein_coding Danio_rerio 0 243
ENSDART00000156736 taf12-003 protein_coding Danio_rerio 0 243
ENSDART00000124208 taf12-001 protein_coding Danio_rerio 0 243

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