C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105987 Ptpru-001 ENSMUSG00000028909 10090 - 4:131768457-131838288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105987 5.533±3.51 17.261±0.51 14.984±2.44 3.004±1.01 2.512±0.63 5.718±1.12 0.719±0.34 6.944±1.12 0.676±0.62 12.542±3.18 0.118±0.04 4.109±1.66 4.961±4.05 0.423±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005886 IEA plasma membrane
GO:0008013 IPI beta-catenin binding
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0034109 IDA homotypic cell-cell adhesion
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083939 PTPRU (3 of 3)-202 protein_coding Danio_rerio 0 196
ENSDART00000036656 PTPRU (3 of 3)-201 protein_coding Danio_rerio 0 196
ENST00000345512 PTPRU-003 protein_coding Homo_sapiens 0 5234
ENST00000373779 PTPRU-001 protein_coding Homo_sapiens 0 5415
ENST00000415600 PTPRU-006 processed_transcript Homo_sapiens 0 1731
ENST00000428026 PTPRU-008 protein_coding Homo_sapiens 0 5343
ENST00000460170 PTPRU-002 protein_coding Homo_sapiens 0 5293
ENST00000465525 PTPRU-004 retained_intron Homo_sapiens 0 830
ENST00000493601 PTPRU-007 processed_transcript Homo_sapiens 0 891
ENST00000527027 PTPRU-009 processed_transcript Homo_sapiens 0 667
ENST00000531385 PTPRU-010 retained_intron Homo_sapiens 0 619

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