C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373779 PTPRU-001 ENSG00000060656 9606 + 1:29236516-29326800 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373779
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373779 3.206±0.00 6.705±0.00 2.582±0.00 2.622±0.00 0.761±0.00 1.219±0.13 2.854±1.10 3.853±0.00 5.986±4.74 7.946±1.62 0.998±0.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IDA:IEA protein tyrosine phosphatase activity
GO:0005001 NAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006470 IDA:IEA protein dephosphorylation
GO:0007155 NAS cell adhesion
GO:0007185 NAS transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0008013 IPI beta-catenin binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0016337 IDA single organismal cell-cell adhesion
GO:0016791 IEA phosphatase activity
GO:0030154 IEA cell differentiation
GO:0030336 IDA negative regulation of cell migration
GO:0034394 IDA protein localization to cell surface
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0060070 IDA canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105987 Ptpru-001 protein_coding Mus_musculus 0 5415
ENSMUST00000127633 Ptpru-002 processed_transcript Mus_musculus 0 4789
ENSMUST00000030741 Ptpru-003 protein_coding Mus_musculus 0 2843
ENSMUST00000097860 Ptpru-004 protein_coding Mus_musculus 0 2604
ENSDART00000137189 ptprua-001 protein_coding Danio_rerio 0 865
ENSDART00000083939 PTPRU (3 of 3)-202 protein_coding Danio_rerio 0 741
ENSMUST00000139641 Ptpru-008 retained_intron Mus_musculus 0 599
ENSDART00000036656 PTPRU (3 of 3)-201 protein_coding Danio_rerio 0 483
ENSMUST00000123878 Ptpru-005 processed_transcript Mus_musculus 0 409
ENSDART00000151254 ptprua-002 protein_coding Danio_rerio 0 368
ENSMUST00000144136 Ptpru-007 processed_transcript Mus_musculus 0 283
ENSMUST00000154224 Ptpru-006 retained_intron Mus_musculus 0 198
ENSDART00000126624 ptprjb-201 protein_coding Danio_rerio 0.000002 60
ENSDART00000153940 ptprjb-001 protein_coding Danio_rerio 0.000002 60

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