C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEP domain containing 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106041 Depdc1a-002 ENSMUSG00000028175 10090 + 3:159495458-159529459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000106041
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106041 0.146±0.06 0.212±0.00 0.382±0.00 0.162±0.13 0.320±0.14 0.051±0.03 2.428±1.04 0.045±0.02 0.029±0.01 0.489±0.30 1.340±1.15 0.054±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 ISS transcriptional repressor complex
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370966 DEPDC1-001 protein_coding Homo_sapiens 0 1827
ENST00000421655 RP11-18B3.2-001 processed_pseudogene Homo_sapiens 0 928
ENST00000456315 DEPDC1-002 protein_coding Homo_sapiens 0 1024
ENST00000488146 DEPDC1-005 retained_intron Homo_sapiens 0 804
ENST00000489862 DEPDC1-003 nonsense_mediated_decay Homo_sapiens 0 804
ENST00000525124 DEPDC1-004 protein_coding Homo_sapiens 0 460
ENST00000559530 RP11-456J20.1-001 processed_pseudogene Homo_sapiens 0 852

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