C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106240 Itgam-002 ENSMUSG00000030786 10090 + 7:128062683-128117531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106240
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106240 2.698±0.13 0.151±0.00 7.017±4.01 0.912±0.11 0.502±0.16 0.338±0.07 0.107±0.04 1.330±0.16 0.071±0.02 1.455±0.47 0.105±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035O CIL_00035O_0002 CGP 7:128062640-128150656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001846 IDA opsonin binding
GO:0002523 IMP leukocyte migration involved in inflammatory response
GO:0005634 IDA nucleus
GO:0007155 IMP cell adhesion
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008201 IDA heparin binding
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0014005 IDA microglia development
GO:0016021 IDA integral component of membrane
GO:0016337 IGI single organismal cell-cell adhesion
GO:0030593 IMP neutrophil chemotaxis
GO:0043395 IDA heparan sulfate proteoglycan binding
GO:0045123 IMP cellular extravasation
GO:0046872 IEA metal ion binding
GO:0050798 IMP activated T cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287497 ITGAM-002 protein_coding Homo_sapiens 0 1133
ENST00000544665 ITGAM-001 protein_coding Homo_sapiens 0 1133
ENST00000567031 ITGAM-003 protein_coding Homo_sapiens 0 368

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