C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha M (complement component 3 receptor 3 subunit)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287497 ITGAM-002 ENSG00000169896 9606 + 16:31259990-31331768 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyPlacentaTestisENST00000287497
Transcript ID Bladder Brain Breast Colon Heart Kidney Placenta Testis
ENST00000287497 0.100±0.00 0.453±0.00 1.065±0.00 0.313±0.00 0.125±0.00 0.743±0.00 2.448±0.00 0.443±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035O CIL_00035O_0001 CGP 16:31259990-31382997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IPI glycoprotein binding
GO:0002224 TAS toll-like receptor signaling pathway
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007596 TAS blood coagulation
GO:0008305 IEA integrin complex
GO:0009986 IDA cell surface
GO:0010668 IEP ectodermal cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0045087 TAS innate immune response
GO:0046872 IEA metal ion binding
GO:0050900 TAS leukocyte migration
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064821 Itgam-004 protein_coding Mus_musculus 0 2405
ENSMUST00000106242 Itgam-201 protein_coding Mus_musculus 0 2403
ENSMUST00000120355 Itgam-003 protein_coding Mus_musculus 0 2350
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 2348
ENSMUST00000126475 Itgam-007 protein_coding Mus_musculus 0 2228
ENSMUST00000106240 Itgam-002 protein_coding Mus_musculus 0 1133
ENSMUST00000033053 Itgax-201 protein_coding Mus_musculus 0 477

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