C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00035O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169896-ENSG00000140678 CGP 9606 16:31259990-31382997
GeneTranscriptPositionBiotype
ENSG00000140678 (ITGAX)
integrin, alpha X (complement component 3 receptor 4 subunit) 		ENST00000268296 (ITGAX-001) 31355134-31382997 protein_coding
ENST00000562138 (ITGAX-010) 31371474-31372654 retained_intron
ENST00000562522 (ITGAX-004) 31355222-31382943 protein_coding
ENST00000562918 (ITGAX-003) 31355174-31358455 protein_coding
ENST00000564308 (ITGAX-008) 31355134-31356278 retained_intron
ENST00000567409 (ITGAX-002) 31355188-31357862 retained_intron
ENST00000571644 (ITGAX-005) 31359937-31382932 retained_intron
ENSG00000169896 (ITGAM)
integrin, alpha M (complement component 3 receptor 3 subunit) 		ENST00000287497 (ITGAM-002) 31259990-31331768 protein_coding
ENST00000544665 (ITGAM-001) 31259994-31332892 protein_coding
ENST00000561838 (ITGAM-005) 31324678-31326968 retained_intron
ENST00000565142 (ITGAM-008) 31330380-31331536 protein_coding
ENST00000567031 (ITGAM-003) 31275592-31324439 protein_coding
ENST00000567178 (ITGAM-007) 31328037-31329905 retained_intron
ENST00000569746 (ITGAM-006) 31329002-31330052 retained_intron
ENST00000570242 (ITGAM-004) 31271885-31273684 retained_intron
ENSG00000261245 (RP11-120K18.3)
 ENST00000561830 (RP11-120K18.3-001) 31361278-31361695 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00035O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030786-ENSMUSG00000030789 CGP 10090 7:128062640-128150656
GeneTranscriptPositionBiotype
ENSMUSG00000030786 (Itgam)
integrin alpha M 		ENSMUST00000064821 (Itgam-004) 128062640-128118490 protein_coding
ENSMUST00000098015 (Itgam-001) 128062683-128128160 protein_coding
ENSMUST00000106240 (Itgam-002) 128062683-128117531 protein_coding
ENSMUST00000106242 (Itgam-201) 128062647-128118491 protein_coding
ENSMUST00000119696 (Itgam-008) 128062728-128070615 protein_coding
ENSMUST00000120355 (Itgam-003) 128062679-128117090 protein_coding
ENSMUST00000126475 (Itgam-007) 128070659-128118490 protein_coding
ENSMUST00000134694 (Itgam-010) 128116436-128127216 protein_coding
ENSMUST00000156593 (Itgam-009) 128062743-128070857 nonsense_mediated_decay
ENSMUSG00000030789 (Itgax)
integrin alpha X 		ENSMUST00000033053 (Itgax-201) 128129547-128150656 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035O_0001ENSG00000140678ENST00000268296ENST00000562138ENST00000562522ENST00000562918ENST00000564308ENST00000567409ENST00000571644ENSG00000169896ENST00000287497ENST00000544665ENST00000561838ENST00000565142ENST00000567031ENST00000567178ENST00000569746ENST00000570242ENSG00000261245ENST00000561830CIL_00035O_0002ENSMUSG00000030786ENSMUST00000064821ENSMUST00000098015ENSMUST00000106240ENSMUST00000106242ENSMUST00000119696ENSMUST00000120355ENSMUST00000126475ENSMUST00000134694ENSMUST00000156593ENSMUSG00000030789ENSMUST00000033053
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035O_0001ENSG00000140678ENST00000268296ENST00000562522ENST00000562918ENST00000567409ENST00000571644ENSG00000169896ENST00000287497ENST00000544665ENSG00000261245ENST00000561830CIL_00035O_0002ENSMUSG00000030786ENSMUST00000064821ENSMUST00000098015ENSMUST00000106240ENSMUST00000106242ENSMUST00000119696ENSMUST00000120355ENSMUST00000126475ENSMUST00000134694ENSMUSG00000030789ENSMUST00000033053
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140678 ENST00000268296 1.888±0.00 1.585±0.00 N/A 0.190±0.06 2.316±1.11 0.560±0.00 0.288±0.00 0.640±0.00 N/A 4.949±4.03 N/A 1.410±0.95 1.124±0.15 0.217±0.02
ENST00000562138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562522 N/A N/A N/A 0.265±0.00 N/A N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A 0.112±0.00
ENST00000562918 N/A N/A N/A 0.392±0.00 N/A N/A N/A N/A N/A 7.216±0.00 N/A 0.900±0.00 N/A 0.234±0.00
ENST00000564308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567409 N/A N/A N/A N/A 1.197±0.00 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571644 0.650±0.00 1.443±0.00 0.180±0.00 0.110±0.05 0.810±0.00 N/A 0.240±0.00 0.115±0.00 0.142±0.00 2.234±0.00 0.280±0.15 0.568±0.34 0.583±0.17 0.217±0.00
ENSG00000169896 ENST00000287497 N/A N/A 0.100±0.00 0.453±0.00 1.065±0.00 0.313±0.00 0.125±0.00 0.743±0.00 N/A N/A N/A N/A 2.448±0.00 0.443±0.00
ENST00000544665 N/A 2.835±0.00 0.050±0.00 N/A 1.069±0.00 1.398±0.00 0.195±0.00 0.614±0.00 0.880±0.00 5.790±0.00 0.054±0.00 0.823±0.52 1.994±0.91 1.177±0.00
ENST00000561838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261245 ENST00000561830 0.176±0.00 N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030786 ENSMUST00000064821 3.417±0.80 1.111±0.62 2.082±0.20 0.173±0.10 4.665±1.71 1.347±0.36 0.608±0.21 0.368±0.18 2.173±2.43 3.441±0.88 0.099±0.00 1.799±0.89 0.440±0.49 0.177±0.07
ENSMUST00000098015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A
ENSMUST00000106240 2.698±0.13 N/A N/A 0.151±0.00 7.017±4.01 0.912±0.11 0.502±0.16 0.338±0.07 0.107±0.04 1.330±0.16 0.071±0.02 1.455±0.47 0.105±0.00 0.041±0.00
ENSMUST00000106242 1.401±0.40 1.328±0.06 1.404±0.64 0.189±0.10 3.446±1.15 1.199±0.39 0.412±0.10 0.503±0.21 1.180±1.46 1.272±0.33 0.175±0.08 1.547±0.64 0.290±0.33 N/A
ENSMUST00000119696 N/A N/A N/A N/A N/A N/A N/A N/A 0.748±0.00 N/A N/A N/A N/A N/A
ENSMUST00000120355 1.827±0.00 0.276±0.00 N/A N/A N/A N/A N/A N/A 0.079±0.04 1.789±0.00 0.031±0.00 0.747±0.00 N/A N/A
ENSMUST00000126475 N/A N/A 0.659±0.00 1.486±0.00 2.738±0.00 N/A N/A N/A 0.085±0.00 N/A 0.262±0.21 1.605±0.35 0.300±0.26 0.213±0.00
ENSMUST00000134694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00
ENSMUST00000156593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030789 ENSMUST00000033053 1.830±0.87 0.549±0.19 0.884±0.10 0.044±0.02 2.469±0.64 1.216±0.52 0.121±0.03 0.380±0.14 0.107±0.08 10.888±0.70 0.077±0.08 0.803±0.33 0.166±0.22 0.078±0.06

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