C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106242 Itgam-201 ENSMUSG00000030786 10090 + 7:128062647-128118491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000106242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000106242 1.401±0.40 1.328±0.06 1.404±0.64 0.189±0.10 3.446±1.15 1.199±0.39 0.412±0.10 0.503±0.21 1.180±1.46 1.272±0.33 0.175±0.08 1.547±0.64 0.290±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035O CIL_00035O_0002 CGP 7:128062640-128150656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001846 IDA opsonin binding
GO:0001948 IEA glycoprotein binding
GO:0002523 IMP leukocyte migration involved in inflammatory response
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0007155 IMP cell adhesion
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008201 IDA heparin binding
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0010668 IEA ectodermal cell differentiation
GO:0014005 IDA microglia development
GO:0016021 IDA integral component of membrane
GO:0016337 IGI single organismal cell-cell adhesion
GO:0030593 IMP neutrophil chemotaxis
GO:0043395 IDA heparan sulfate proteoglycan binding
GO:0045123 IMP cellular extravasation
GO:0046982 IEA protein heterodimerization activity
GO:0050798 IMP activated T cell proliferation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287497 ITGAM-002 protein_coding Homo_sapiens 0 2403
ENST00000544665 ITGAM-001 protein_coding Homo_sapiens 0 2410
ENST00000567031 ITGAM-003 protein_coding Homo_sapiens 0 368

Loading