C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endonuclease V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106244 Endov-001 ENSMUSG00000039850 10090 + 11:119491347-119511423 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106244 2.647±0.57 1.561±0.77 2.369±0.15 4.119±1.72 1.691±0.48 2.158±0.42 1.101±0.09 1.122±0.29 1.072±0.43 2.036±0.23 0.389±0.10 2.125±0.90 0.494±0.15 1.292±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LC CIL_0002LC_0002 CGP 11:119393100-119511437
CIL_00042I CIL_00042I_0002 CGP 11:119491347-119547753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003727 ISS single-stranded RNA binding
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006281 IDA DNA repair
GO:0016888 IDA endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0016891 ISS endoribonuclease activity, producing 5'-phosphomonoesters
GO:0043566 ISS structure-specific DNA binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323854 ENDOV-004 protein_coding Homo_sapiens 0 418
ENST00000517295 ENDOV-026 protein_coding Homo_sapiens 0 545
ENST00000517795 ENDOV-006 protein_coding Homo_sapiens 0 368
ENST00000518137 ENDOV-002 protein_coding Homo_sapiens 0 769
ENST00000518644 ENDOV-024 protein_coding Homo_sapiens 0 508
ENST00000518901 ENDOV-010 protein_coding Homo_sapiens 0 418
ENST00000518907 ENDOV-009 protein_coding Homo_sapiens 0 331
ENST00000519117 ENDOV-014 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000520118 ENDOV-021 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000520136 ENDOV-017 protein_coding Homo_sapiens 0 267
ENST00000520284 ENDOV-008 protein_coding Homo_sapiens 0 333
ENST00000520367 ENDOV-001 protein_coding Homo_sapiens 0 418
ENST00000520484 ENDOV-012 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000520537 ENDOV-011 retained_intron Homo_sapiens 0 224
ENST00000521330 ENDOV-031 processed_transcript Homo_sapiens 0 224
ENST00000521565 ENDOV-022 protein_coding Homo_sapiens 0 518
ENST00000521830 ENDOV-023 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000521847 ENDOV-007 processed_transcript Homo_sapiens 9.94922e-44 182
ENST00000522200 ENDOV-018 protein_coding Homo_sapiens 0 691
ENST00000522577 ENDOV-015 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000522751 ENDOV-005 protein_coding Homo_sapiens 0 418
ENST00000523165 ENDOV-025 processed_transcript Homo_sapiens 3.9937e-43 178
ENST00000523228 ENDOV-019 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000523828 ENDOV-020 protein_coding Homo_sapiens 0 231
ENST00000523999 ENDOV-003 protein_coding Homo_sapiens 0 220

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