C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endonuclease V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323854 ENDOV-004 ENSG00000173818 9606 + 17:80415184-80430343 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LC CIL_0002LC_0001 CGP 17:80260866-80438086
CIL_00042I CIL_00042I_0001 CGP 17:80415165-80477843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0003727 IDA single-stranded RNA binding
GO:0004519 IEA endonuclease activity
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006281 IEA:ISS DNA repair
GO:0016888 ISS endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0016891 IDA endoribonuclease activity, producing 5'-phosphomonoesters
GO:0043566 IDA structure-specific DNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0090502 IDA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140323 Endov-010 protein_coding Mus_musculus 0 634
ENSMUST00000064513 Endov-011 protein_coding Mus_musculus 0 418
ENSMUST00000106245 Endov-003 protein_coding Mus_musculus 0 418
ENSMUST00000129327 Endov-005 protein_coding Mus_musculus 0 418
ENSMUST00000143817 Endov-002 nonsense_mediated_decay Mus_musculus 0 418
ENSMUST00000106244 Endov-001 protein_coding Mus_musculus 0 418
ENSMUST00000154370 Endov-007 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000153204 Endov-006 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000134873 Endov-004 processed_transcript Mus_musculus 0 329
ENSMUST00000132015 Endov-009 retained_intron Mus_musculus 0 231
ENSMUST00000143670 Endov-008 retained_intron Mus_musculus 7.00649e-45 185

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