C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106296 Usp36-001 ENSMUSG00000033909 10090 - 11:118259651-118290231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106296 5.141±2.75 4.014±1.12 5.328±0.20 4.164±0.93 4.813±0.46 4.769±0.54 3.670±0.50 2.830±0.86 3.058±0.76 6.251±1.79 3.694±0.88 6.563±2.34 3.575±0.72 0.907±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062I CIL_00062I_0002 CGP 11:118132019-118290244
CIL_0003UE CIL_0003UE_0003 CGP 11:118259651-118355740

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IEA protein deubiquitination
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312010 USP36-201 protein_coding Homo_sapiens 0 1945
ENST00000449938 USP36-202 protein_coding Homo_sapiens 0 1559
ENST00000542802 USP36-003 protein_coding Homo_sapiens 0 1945
ENST00000586066 USP36-021 protein_coding Homo_sapiens 0 813
ENST00000586531 USP36-012 protein_coding Homo_sapiens 0 492
ENST00000586896 USP36-015 protein_coding Homo_sapiens 0 424
ENST00000587783 USP36-014 protein_coding Homo_sapiens 0 196
ENST00000588086 USP36-008 non_stop_decay Homo_sapiens 0 1945
ENST00000588467 USP36-024 processed_transcript Homo_sapiens 0 569
ENST00000589225 USP36-009 nonsense_mediated_decay Homo_sapiens 0 1945
ENST00000589254 USP36-023 retained_intron Homo_sapiens 0 357
ENST00000589424 USP36-018 protein_coding Homo_sapiens 0 665
ENST00000590312 USP36-025 retained_intron Homo_sapiens 0 508
ENST00000590546 USP36-002 protein_coding Homo_sapiens 0 665
ENST00000591942 USP36-013 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000592231 USP36-004 protein_coding Homo_sapiens 3e-31 141
ENST00000592275 USP36-010 protein_coding Homo_sapiens 0 219
ENST00000592326 USP36-031 processed_transcript Homo_sapiens 0.0000000000001 81
ENST00000592907 USP36-017 retained_intron Homo_sapiens 0 222

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