C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106434 Tmem53-002 ENSMUSG00000048772 10090 + 4:117252042-117268582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106434
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106434 4.193±1.07 13.543±0.00 6.913±3.15 1.862±0.29 4.877±0.45 9.472±3.22 6.418±6.88 3.521±1.39 6.432±3.50 1.012±0.43 80.049±4.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372235 TMEM53-008 protein_coding Homo_sapiens 3e-38 163
ENST00000372237 TMEM53-001 protein_coding Homo_sapiens 0 784
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 0 448
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 5e-38 163
ENST00000372244 TMEM53-005 protein_coding Homo_sapiens 1e-23 115
ENST00000420706 TMEM53-009 protein_coding Homo_sapiens 4e-38 161
ENST00000468117 TMEM53-004 processed_transcript Homo_sapiens 2e-22 111
ENST00000476724 TMEM53-002 processed_transcript Homo_sapiens 6e-23 113
ENST00000495630 TMEM53-006 processed_transcript Homo_sapiens 4e-24 115

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