C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106442 Arhgap17-202 ENSMUSG00000030766 10090 - 7:123279150-123369915 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106442 4.674±2.49 8.924±3.21 1.677±0.52 5.365±1.24 5.262±2.65 10.492±2.86 1.486±0.22 3.713±0.96 1.987±0.91 3.698±1.80 8.945±3.64 10.094±4.23 1.507±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KU CIL_0005KU_0002 CGP 7:123214780-123369915
CIL_0003XC CIL_0003XC_0002 CGP 7:123279150-123430358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005923 IEA tight junction
GO:0007165 IEA signal transduction
GO:0017124 IEA SH3 domain binding
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289968 ARHGAP17-001 protein_coding Homo_sapiens 0 2272
ENST00000303665 ARHGAP17-002 protein_coding Homo_sapiens 0 1838
ENST00000455311 ARHGAP17-014 protein_coding Homo_sapiens 0 732
ENST00000570320 ARHGAP17-003 retained_intron Homo_sapiens 0 420
ENST00000570841 ARHGAP17-019 retained_intron Homo_sapiens 0 601
ENST00000571406 ARHGAP17-006 protein_coding Homo_sapiens 0 357
ENST00000571480 ARHGAP17-018 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000571843 ARHGAP17-007 protein_coding Homo_sapiens 0 394
ENST00000572314 ARHGAP17-008 retained_intron Homo_sapiens 0 1310
ENST00000573625 ARHGAP17-016 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000573703 ARHGAP17-005 retained_intron Homo_sapiens 0 403
ENST00000573765 ARHGAP17-023 protein_coding Homo_sapiens 0 375
ENST00000575283 ARHGAP17-004 retained_intron Homo_sapiens 0 438
ENST00000575656 ARHGAP17-020 retained_intron Homo_sapiens 0 719
ENST00000575975 ARHGAP17-009 processed_transcript Homo_sapiens 0 804
ENST00000576387 ARHGAP17-021 processed_transcript Homo_sapiens 0 316

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