C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106653 Usp47-201 ENSMUSG00000059263 10090 + 7:112023506-112111386 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106653 9.509±2.37 7.967±1.49 14.498±2.16 22.164±4.21 9.410±2.69 10.247±2.05 8.745±2.19 8.306±1.62 7.923±1.80 11.247±1.30 34.140±7.75 15.228±8.63 44.248±21.38 62.891±39.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0001HU CIL_0001HU_0003 CGP 7:112023506-112159057

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006284 ISS base-excision repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0010972 ISS negative regulation of G2/M transition of mitotic cell cycle
GO:0019005 ISS SCF ubiquitin ligase complex
GO:0030307 ISS positive regulation of cell growth
GO:0034644 IMP cellular response to UV
GO:0035520 ISS monoubiquitinated protein deubiquitination
GO:0042493 ISS response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0043154 ISS negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0071987 IEA WD40-repeat domain binding
GO:1902230 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305481 USP47-005 processed_transcript Homo_sapiens 0 1360
ENST00000339865 USP47-001 protein_coding Homo_sapiens 0 5535
ENST00000399455 USP47-003 protein_coding Homo_sapiens 0 5819
ENST00000525078 USP47-006 retained_intron Homo_sapiens 0 1114
ENST00000525257 USP47-013 processed_transcript Homo_sapiens 0 333
ENST00000525367 USP47-008 retained_intron Homo_sapiens 0 425
ENST00000527733 USP47-002 protein_coding Homo_sapiens 0 5598
ENST00000529813 USP47-004 retained_intron Homo_sapiens 0 1133
ENST00000530369 USP47-010 retained_intron Homo_sapiens 0 488

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