C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399455 USP47-003 ENSG00000170242 9606 + 11:11842066-11959323 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLungMuscleENST00000399455
Transcript ID Bladder Brain Breast Heart Kidney Lung Muscle
ENST00000399455 1.238±0.00 3.291±0.00 1.806±0.00 2.802±1.55 0.795±0.00 2.599±0.00 3.973±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HU CIL_0001HU_0002 CGP 11:11841423-12009769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006284 IMP base-excision repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0010972 IMP negative regulation of G2/M transition of mitotic cell cycle
GO:0019005 IDA SCF ubiquitin ligase complex
GO:0030307 IMP positive regulation of cell growth
GO:0034644 ISS cellular response to UV
GO:0035520 IDA monoubiquitinated protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042493 IMP response to drug
GO:0043066 IMP negative regulation of apoptotic process
GO:0043154 IMP negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0071987 IPI WD40-repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106653 Usp47-201 protein_coding Mus_musculus 0 5819

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