C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106731 Lrp8-003 ENSMUSG00000028613 10090 + 4:107830985-107876840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000106731
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106731 0.145±0.11 40.342±7.72 0.446±0.06 0.268±0.07 0.154±0.02 0.878±0.55 0.215±0.01 0.016±0.01 1.631±0.41 0.657±0.00 5.915±2.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306052 LRP8-001 protein_coding Homo_sapiens 0 2182
ENST00000347547 LRP8-011 protein_coding Homo_sapiens 0 2071
ENST00000354412 LRP8-003 protein_coding Homo_sapiens 0 1934
ENST00000371454 LRP8-002 protein_coding Homo_sapiens 0 2385
ENST00000459674 LRP8-006 retained_intron Homo_sapiens 0 1681
ENST00000460214 LRP8-007 processed_transcript Homo_sapiens 0 689
ENST00000465675 LRP8-004 protein_coding Homo_sapiens 0 1965
ENST00000475501 LRP8-009 protein_coding Homo_sapiens 0 804
ENST00000480045 LRP8-005 nonsense_mediated_decay Homo_sapiens 0 2073
ENST00000481431 LRP8-008 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000613948 LRP8-201 protein_coding Homo_sapiens 0 1914

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