C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106732 Lrp8-002 ENSMUSG00000028613 10090 + 4:107802413-107872346 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000106732
Transcript ID Adipose Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106732 0.424±0.12 0.402±0.17 0.962±0.00 0.149±0.02 0.037±0.02 2.855±0.22 14.401±13.57 8.161±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 TAS low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005875 IEA microtubule associated complex
GO:0005886 TAS plasma membrane
GO:0005901 IEA caveola
GO:0006897 IEA endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0008035 IEA high-density lipoprotein particle binding
GO:0014069 IEA postsynaptic density
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019894 IEA kinesin binding
GO:0021766 IGI hippocampus development
GO:0021819 IGI layer formation in cerebral cortex
GO:0021987 IEA cerebral cortex development
GO:0030229 IEA very-low-density lipoprotein particle receptor activity
GO:0030424 IEA axon
GO:0030425 IEA dendrite
GO:0042493 IEA response to drug
GO:0043025 IEA neuronal cell body
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity
GO:0071363 IEA cellular response to growth factor stimulus
GO:0071397 IEA cellular response to cholesterol

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306052 LRP8-001 protein_coding Homo_sapiens 0 2459
ENST00000347547 LRP8-011 protein_coding Homo_sapiens 0 2414
ENST00000354412 LRP8-003 protein_coding Homo_sapiens 0 1559
ENST00000371454 LRP8-002 protein_coding Homo_sapiens 0 2073
ENST00000459674 LRP8-006 retained_intron Homo_sapiens 0 1681
ENST00000460214 LRP8-007 processed_transcript Homo_sapiens 0 689
ENST00000465675 LRP8-004 protein_coding Homo_sapiens 0 1762
ENST00000475501 LRP8-009 protein_coding Homo_sapiens 0 802
ENST00000480045 LRP8-005 nonsense_mediated_decay Homo_sapiens 0 2737
ENST00000481431 LRP8-008 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000613948 LRP8-201 protein_coding Homo_sapiens 0 1539

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