C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106733 Lrp8-007 ENSMUSG00000028613 10090 + 4:107802277-107872816 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLiverLungOvaryTestisENSMUST00000106733
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000106733 0.229±0.10 0.761±0.22 0.125±0.00 0.461±0.31 0.460±0.30 0.098±0.02 0.050±0.03 0.291±0.00 4.210±2.24 9.675±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 TAS low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0006898 TAS receptor-mediated endocytosis
GO:0016021 IEA integral component of membrane
GO:0021766 IGI hippocampus development
GO:0021819 IGI layer formation in cerebral cortex
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306052 LRP8-001 protein_coding Homo_sapiens 0 3182
ENST00000347547 LRP8-011 protein_coding Homo_sapiens 0 2071
ENST00000354412 LRP8-003 protein_coding Homo_sapiens 0 1668
ENST00000371454 LRP8-002 protein_coding Homo_sapiens 0 3424
ENST00000459674 LRP8-006 retained_intron Homo_sapiens 0 1681
ENST00000460214 LRP8-007 processed_transcript Homo_sapiens 0 689
ENST00000465675 LRP8-004 protein_coding Homo_sapiens 0 1965
ENST00000475501 LRP8-009 protein_coding Homo_sapiens 0 804
ENST00000480045 LRP8-005 nonsense_mediated_decay Homo_sapiens 0 2073
ENST00000481431 LRP8-008 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000613948 LRP8-201 protein_coding Homo_sapiens 0 1648

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