C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106962 Cdc27-002 ENSMUSG00000020687 10090 - 11:104504937-104550392 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000106962
Transcript ID Adipose Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000106962 2.741±0.42 2.086±0.51 2.109±0.51 0.791±0.07 0.915±0.25 1.537±0.00 3.203±0.79 5.251±1.66 8.266±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0002 VISTA 11:104342398-104943585
CIL_0002QR CIL_0002QR_0002 CGP 11:104502745-104595753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005680 ISS anaphase-promoting complex
GO:0070979 ISS protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000066544 CDC27-001 protein_coding Homo_sapiens 0 4217
ENST00000425026 CDC27P2-001 processed_pseudogene Homo_sapiens 0 2169
ENST00000445384 CDC27P1-001 processed_pseudogene Homo_sapiens 0 933
ENST00000525495 CDC27-003 retained_intron Homo_sapiens 0 1748
ENST00000526866 CDC27-006 nonsense_mediated_decay Homo_sapiens 0 1430
ENST00000527547 CDC27-005 protein_coding Homo_sapiens 0 3517
ENST00000528748 CDC27-009 processed_transcript Homo_sapiens 0 1003
ENST00000531206 CDC27-002 protein_coding Homo_sapiens 0 4327
ENST00000532575 CDC27-008 processed_transcript Homo_sapiens 0 894
ENST00000532893 CDC27-011 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000533415 CDC27-004 nonsense_mediated_decay Homo_sapiens 0 3229
ENST00000570740 CDC27-016 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000570818 CDC27-017 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000571643 CDC27-014 protein_coding Homo_sapiens 0 584
ENST00000573502 CDC27-015 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000573550 CDC27-013 nonsense_mediated_decay Homo_sapiens 0 553
ENST00000574304 CDC27-018 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000575483 CDC27-012 protein_coding Homo_sapiens 0 944
ENST00000575830 CDC27-020 processed_transcript Homo_sapiens 0 394
ENST00000576484 CDC27-019 nonsense_mediated_decay Homo_sapiens 0 357

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