C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VIIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107127 Myo7a-004 ENSMUSG00000030761 10090 - 7:98051276-98119503 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000107127
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000107127 0.586±0.00 1.074±0.00 0.545±0.00 0.484±0.00 0.226±0.07 0.997±0.10 0.429±0.13 0.227±0.03 3.099±1.50 0.318±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I4 CIL_0001I4_0002 CGP 7:97919955-98119524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 ISS photoreceptor outer segment
GO:0001845 IMP phagolysosome assembly
GO:0001917 ISS photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005516 ISS calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005765 ISS lysosomal membrane
GO:0005829 ISS cytosol
GO:0005902 ISA microvillus
GO:0006886 IMP intracellular protein transport
GO:0006909 IMP phagocytosis
GO:0007040 ISS lysosome organization
GO:0007600 IMP sensory perception
GO:0007601 ISS visual perception
GO:0007605 ISS sensory perception of sound
GO:0016324 IDA apical plasma membrane
GO:0019904 IPI protein domain specific binding
GO:0030030 IMP cell projection organization
GO:0030507 ISO spectrin binding
GO:0032391 IDA photoreceptor connecting cilium
GO:0032420 IDA stereocilium
GO:0042470 IDA melanosome
GO:0042472 IMP inner ear morphogenesis
GO:0042490 IMP mechanoreceptor differentiation
GO:0042491 IMP auditory receptor cell differentiation
GO:0045202 ISS synapse
GO:0048563 IMP post-embryonic organ morphogenesis
GO:0048839 IMP inner ear development
GO:0050953 IMP sensory perception of light stimulus
GO:0051875 IMP pigment granule localization
GO:0051904 IMP pigment granule transport
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060113 IMP inner ear receptor cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088945 myo7aa-001 protein_coding Danio_rerio 0 3890
ENSDART00000003181 myo7ab-201 protein_coding Danio_rerio 0 1585
ENSDART00000148019 myo7ab-001 protein_coding Danio_rerio 0 1567
ENST00000409090 MYO7B-002 protein_coding Homo_sapiens 0 250
ENST00000409619 MYO7A-009 protein_coding Homo_sapiens 0 8379
ENST00000409709 MYO7A-001 protein_coding Homo_sapiens 0 5871
ENST00000409816 MYO7B-001 protein_coding Homo_sapiens 0 250
ENST00000409893 MYO7A-005 protein_coding Homo_sapiens 0 4440
ENST00000428314 MYO7B-201 protein_coding Homo_sapiens 0 250
ENST00000458169 MYO7A-010 protein_coding Homo_sapiens 0 5230
ENST00000458637 MYO7A-002 protein_coding Homo_sapiens 0 8355
ENST00000467137 MYO7A-007 retained_intron Homo_sapiens 0 566
ENST00000481328 MYO7A-003 retained_intron Homo_sapiens 0 2712
ENST00000491278 MYO7B-004 retained_intron Homo_sapiens 6e-36 158
ENST00000496841 MYO7B-003 retained_intron Homo_sapiens 7e-36 158
ENST00000605744 MYO7A-004 processed_transcript Homo_sapiens 0 435
ENST00000620575 MYO7A-201 protein_coding Homo_sapiens 0 4399

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