C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107827 Pax5-005 ENSMUSG00000014030 10090 - 4:44531145-44710418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderKidneyOvaryENSMUST00000107827
Transcript ID Adipose Bladder Kidney Ovary
ENSMUST00000107827 0.062±0.00 0.003±0.00 0.034±0.00 0.147±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K6 CIL_0006K6_0002 CGP 4:44300876-44710487
CIL_000843 CIL_000843_0002 VISTA 4:44530265-45131018
CIL_0006K7 CIL_0006K7_0002 CGP 4:44531145-44932215

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0009887 TAS organ morphogenesis
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0051573 IMP negative regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358127 PAX5-001 protein_coding Homo_sapiens 0 1171
ENST00000377840 PAX5-002 nonsense_mediated_decay Homo_sapiens 0 1173
ENST00000377847 PAX5-012 protein_coding Homo_sapiens 0 1164
ENST00000377852 PAX5-003 protein_coding Homo_sapiens 0 1171
ENST00000377853 PAX5-004 protein_coding Homo_sapiens 0 1171
ENST00000414447 PAX5-013 protein_coding Homo_sapiens 0 745
ENST00000446742 PAX5-008 protein_coding Homo_sapiens 0 518
ENST00000520154 PAX5-007 protein_coding Homo_sapiens 0 1173
ENST00000520281 PAX5-005 protein_coding Homo_sapiens 0 745
ENST00000522003 PAX5-009 protein_coding Homo_sapiens 0 806
ENST00000523145 PAX5-010 protein_coding Homo_sapiens 0 806
ENST00000523241 PAX5-006 protein_coding Homo_sapiens 0 1389
ENST00000523493 PAX5-011 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000524340 PAX5-014 protein_coding Homo_sapiens 0 294

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