C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RGP1 retrograde golgi transport homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378078 RGP1-001 ENSG00000107185 9606 + 9:35749287-35758575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378078 6.078±0.00 3.855±0.00 1.758±0.00 1.001±0.00 4.116±0.00 1.622±0.88 2.748±1.84 2.268±2.04 2.392±0.09 2.334±0.11 5.653±3.57 4.642±1.90 5.262±0.36 6.152±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007C2 CIL_0007C2_0001 CGP 9:35736866-35758575
CIL_0007C1 CIL_0007C1_0001 CGP 9:35749287-35758575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0016020 IDA membrane
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0017137 IDA Rab GTPase binding
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0034066 IDA RIC1-RGP1 guanyl-nucleotide exchange factor complex
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0043234 IDA protein complex
GO:1903363 IMP negative regulation of cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107886 Rgp1-001 protein_coding Mus_musculus 0 1794
ENSMUST00000030190 Rgp1-007 protein_coding Mus_musculus 0 1489
ENSMUST00000117140 Rgp1-006 protein_coding Mus_musculus 0 1330
ENSMUST00000131178 Rgp1-002 processed_transcript Mus_musculus 0 580
ENSMUST00000141612 Rgp1-005 retained_intron Mus_musculus 0 579
ENSMUST00000141782 Rgp1-004 retained_intron Mus_musculus 0 335
ENSMUST00000107884 Msmp-001 protein_coding Mus_musculus 0 292

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