C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 7 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108156 Bbs7-001 ENSMUSG00000037325 10090 - 3:36573142-36613477 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108156
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108156 0.923±0.30 0.424±0.00 2.791±0.23 3.838±1.76 0.759±0.35 0.249±0.18 1.751±0.44 2.678±1.73 1.086±0.47 2.769±0.21 2.217±1.82 2.168±1.31 12.999±1.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KF CIL_0000KF_0002 CGP 3:36564866-36613477
CIL_0007AB CIL_0007AB_0002 CGP 3:36573142-36690167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001654 IGI eye development
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0005886 IEA plasma membrane
GO:0005930 IDA axoneme
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007224 IGI smoothened signaling pathway
GO:0007420 IGI brain development
GO:0007507 IGI heart development
GO:0008104 IMP protein localization
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034464 IDA BBSome
GO:0035058 IEA nonmotile primary cilium assembly
GO:0036064 IDA ciliary basal body
GO:0045444 IEP fat cell differentiation
GO:0060021 IGI palate development
GO:0060173 IGI limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264499 BBS7-001 protein_coding Homo_sapiens 0 2495
ENST00000506636 BBS7-003 protein_coding Homo_sapiens 0 2351
ENST00000507814 BBS7-007 protein_coding Homo_sapiens 0 499

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