C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofibromatosis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108251 Nf1-003 ENSMUSG00000020716 10090 + 11:79339792-79578942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLungOvaryPlacentaTestisENSMUST00000108251
Transcript ID Adrenal Breast Colon Heart Lung Ovary Placenta Testis
ENSMUST00000108251 2.053±0.16 0.897±0.00 2.042±0.00 0.396±0.00 2.061±0.00 2.812±1.39 0.206±0.00 3.156±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SM CIL_0007SM_0002 VISTA 11:78750979-79355443
CIL_0004GN CIL_0004GN_0003 CGP 11:79339693-79581612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IMP MAPK cascade
GO:0001649 IMP osteoblast differentiation
GO:0001656 IMP metanephros development
GO:0001666 IMP response to hypoxia
GO:0001889 IMP liver development
GO:0001937 IMP negative regulation of endothelial cell proliferation
GO:0001938 IGI positive regulation of endothelial cell proliferation
GO:0001952 IMP regulation of cell-matrix adhesion
GO:0001953 IGI negative regulation of cell-matrix adhesion
GO:0005096 IMP GTPase activator activity
GO:0005099 IBA Ras GTPase activator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006469 IMP negative regulation of protein kinase activity
GO:0007154 IMP cell communication
GO:0007265 IMP Ras protein signal transduction
GO:0007406 IMP negative regulation of neuroblast proliferation
GO:0007420 IMP brain development
GO:0007422 IMP peripheral nervous system development
GO:0007507 IMP heart development
GO:0007519 IMP skeletal muscle tissue development
GO:0008285 IMP negative regulation of cell proliferation
GO:0008429 ISS phosphatidylethanolamine binding
GO:0008542 IMP visual learning
GO:0008625 IGI extrinsic apoptotic signaling pathway via death domain receptors
GO:0014044 IMP Schwann cell development
GO:0014065 IMP phosphatidylinositol 3-kinase signaling
GO:0016525 IGI negative regulation of angiogenesis
GO:0021510 IMP spinal cord development
GO:0021897 IMP forebrain astrocyte development
GO:0021915 IGI neural tube development
GO:0021987 IMP cerebral cortex development
GO:0022011 IMP myelination in peripheral nervous system
GO:0030036 IGI actin cytoskeleton organization
GO:0030198 IMP extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0030325 IMP adrenal gland development
GO:0030336 IGI negative regulation of cell migration
GO:0031210 ISS phosphatidylcholine binding
GO:0031235 IBA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0032228 IGI regulation of synaptic transmission, GABAergic
GO:0032320 IMP positive regulation of Ras GTPase activity
GO:0035021 IGI negative regulation of Rac protein signal transduction
GO:0042060 IMP wound healing
GO:0042127 IGI regulation of cell proliferation
GO:0042992 IMP negative regulation of transcription factor import into nucleus
GO:0043065 IGI positive regulation of apoptotic process
GO:0043407 IGI negative regulation of MAP kinase activity
GO:0043409 IMP negative regulation of MAPK cascade
GO:0043473 IMP pigmentation
GO:0043525 IGI positive regulation of neuron apoptotic process
GO:0045124 IMP regulation of bone resorption
GO:0045671 IGI negative regulation of osteoclast differentiation
GO:0045685 IMP regulation of glial cell differentiation
GO:0045762 IMP positive regulation of adenylate cyclase activity
GO:0045765 IMP regulation of angiogenesis
GO:0046580 IMP negative regulation of Ras protein signal transduction
GO:0046929 IGI negative regulation of neurotransmitter secretion
GO:0048147 IMP negative regulation of fibroblast proliferation
GO:0048169 IGI regulation of long-term neuronal synaptic plasticity
GO:0048485 IMP sympathetic nervous system development
GO:0048593 IMP camera-type eye morphogenesis
GO:0048712 IMP negative regulation of astrocyte differentiation
GO:0048715 IMP negative regulation of oligodendrocyte differentiation
GO:0048745 IMP smooth muscle tissue development
GO:0048844 IMP artery morphogenesis
GO:0048853 IMP forebrain morphogenesis
GO:1902043 IMP positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2001241 IMP positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356175 NF1-002 protein_coding Homo_sapiens 0 11760
ENST00000358273 NF1-001 protein_coding Homo_sapiens 0 6113
ENST00000415351 NF1P8-001 unprocessed_pseudogene Homo_sapiens 0 1504
ENST00000426025 NF1P6-001 unprocessed_pseudogene Homo_sapiens 0 881
ENST00000431387 NF1-010 protein_coding Homo_sapiens 0 2556
ENST00000456735 NF1-003 protein_coding Homo_sapiens 0 9947
ENST00000457709 NF1P3-001 unprocessed_pseudogene Homo_sapiens 0 448
ENST00000466819 NF1-007 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000468273 NF1-013 protein_coding Homo_sapiens 0 534
ENST00000471572 NF1-014 nonsense_mediated_decay Homo_sapiens 0 2558
ENST00000479536 NF1-012 nonsense_mediated_decay Homo_sapiens 0 725
ENST00000479614 NF1-008 nonsense_mediated_decay Homo_sapiens 0 787
ENST00000487476 NF1-004 retained_intron Homo_sapiens 0 2460
ENST00000489712 NF1-023 protein_coding Homo_sapiens 0 737
ENST00000490416 NF1-011 retained_intron Homo_sapiens 0 416
ENST00000493220 NF1-005 retained_intron Homo_sapiens 0 3956
ENST00000495910 NF1-006 nonsense_mediated_decay Homo_sapiens 0 4654
ENST00000549579 NF1P7-001 unprocessed_pseudogene Homo_sapiens 0 1306
ENST00000549593 RP11-266O15.3-001 unprocessed_pseudogene Homo_sapiens 0 579
ENST00000556855 NF1P2-001 unprocessed_pseudogene Homo_sapiens 0 2047
ENST00000577967 NF1-016 retained_intron Homo_sapiens 0 357
ENST00000579081 NF1-009 nonsense_mediated_decay Homo_sapiens 0 6551
ENST00000581113 NF1-017 processed_transcript Homo_sapiens 0 1707
ENST00000581790 NF1-015 nonsense_mediated_decay Homo_sapiens 0 918
ENST00000582892 NF1-019 retained_intron Homo_sapiens 0 230
ENST00000584328 NF1-018 retained_intron Homo_sapiens 0 708
ENST00000588287 NF1P5-001 processed_pseudogene Homo_sapiens 0 411
ENST00000604105 NF1P1-001 unprocessed_pseudogene Homo_sapiens 0 2063
ENST00000612076 NF1P4-001 unprocessed_pseudogene Homo_sapiens 0 867
ENST00000613227 RP11-536C10.25-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 628
ENST00000620025 RP11-536C10.25-002 processed_transcript Homo_sapiens 0 586
ENST00000621292 RP11-597A11.10-001 unprocessed_pseudogene Homo_sapiens 0 518

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