C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofibromin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456735 NF1-003 ENSG00000196712 9606 + 17:31200536-31374433 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000456735
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000456735 2.114±0.00 5.367±0.00 2.257±0.00 2.331±0.00 2.885±0.00 5.015±0.00 2.832±0.00 1.252±0.38 3.944±0.00 3.387±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GN CIL_0004GN_0002 CGP 17:31094927-31382116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005099 IEA Ras GTPase activator activity
GO:0005488 IEA binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0032318 IEA regulation of Ras GTPase activity
GO:0032320 IEA positive regulation of Ras GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108251 Nf1-003 protein_coding Mus_musculus 0 9947
ENSMUST00000071325 Nf1-001 protein_coding Mus_musculus 0 5847
ENSMUST00000146699 Nf1-007 retained_intron Mus_musculus 0 3705
ENSMUST00000137997 Nf1-006 protein_coding Mus_musculus 0 3278
ENSMUST00000131800 Nf1-004 retained_intron Mus_musculus 0 911
ENSMUST00000130979 Nf1-008 processed_transcript Mus_musculus 0 787
ENSMUST00000122917 Nf1-002 processed_transcript Mus_musculus 0 785

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