C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004GN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004184-ENSDARG00000004184 CGP 7955 10:38602081-38728184
GeneTranscriptPositionBiotype
ENSDARG00000004184 (nf1b)
neurofibromin 1b 		ENSDART00000131897 (nf1b-001) 38602081-38728184 protein_coding
ENSDARG00000086573 (omga)
oligodendrocyte myelin glycoprotein a 		ENSDART00000147705 (omga-001) 38667497-38670806 protein_coding
ENSDARG00000095693 (si:dkey-15g19.2)
si:dkey-15g19.2 		ENSDART00000140604 (si:dkey-15g19.2-001) 38685707-38690530 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004GN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196712-ENSG00000196712 CGP 9606 17:31094927-31382116
GeneTranscriptPositionBiotype
ENSG00000126861 (OMG)
oligodendrocyte myelin glycoprotein 		ENST00000247271 (OMG-001) 31294647-31297411 protein_coding
ENST00000580156 (OMG-003) 31272449-31297230 processed_transcript
ENST00000582029 (OMG-002) 31294575-31297539 retained_intron
ENST00000584094 (OMG-004) 31272013-31273622 processed_transcript
ENSG00000185862 (EVI2B)
ecotropic viral integration site 2B 		ENST00000330927 (EVI2B-001) 31303766-31314112 protein_coding
ENST00000577894 (EVI2B-002) 31304234-31314105 protein_coding
ENSG00000196712 (NF1)
neurofibromin 1 		ENST00000356175 (NF1-002) 31094927-31377677 protein_coding
ENST00000358273 (NF1-001) 31094927-31377677 protein_coding
ENST00000422121 (NF1-020) 31378891-31382106 nonsense_mediated_decay
ENST00000431387 (NF1-010) 31094977-31222764 protein_coding
ENST00000456735 (NF1-003) 31200536-31374433 protein_coding
ENST00000466819 (NF1-007) 31233030-31261794 nonsense_mediated_decay
ENST00000468273 (NF1-013) 31358548-31360956 protein_coding
ENST00000471572 (NF1-014) 31337817-31381887 nonsense_mediated_decay
ENST00000479536 (NF1-012) 31330329-31336873 nonsense_mediated_decay
ENST00000479614 (NF1-008) 31233030-31261794 nonsense_mediated_decay
ENST00000487476 (NF1-004) 31094927-31219359 retained_intron
ENST00000488981 (NF1-022) 31380141-31382116 processed_transcript
ENST00000489712 (NF1-023) 31128458-31169964 protein_coding
ENST00000490416 (NF1-011) 31159065-31183027 retained_intron
ENST00000493220 (NF1-005) 31225083-31331904 retained_intron
ENST00000495910 (NF1-006) 31156041-31254292 nonsense_mediated_decay
ENST00000498569 (NF1-021) 31378648-31382116 processed_transcript
ENST00000577967 (NF1-016) 31355804-31361602 retained_intron
ENST00000579081 (NF1-009) 31095208-31374287 nonsense_mediated_decay
ENST00000581113 (NF1-017) 31318413-31336473 processed_transcript
ENST00000581790 (NF1-015) 31337817-31360597 nonsense_mediated_decay
ENST00000582892 (NF1-019) 31340280-31349150 retained_intron
ENST00000584328 (NF1-018) 31337763-31343098 retained_intron
ENSG00000263535 (AK4P1)
adenylate kinase 4 pseudogene 1 		ENST00000581275 (AK4P1-001) 31345521-31346187 processed_pseudogene
ENSG00000266371 (RP11-142O6.1)
 ENST00000584382 (RP11-142O6.1-001) 31133182-31138518 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0004GN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020716-ENSMUSG00000020716 CGP 10090 11:79339693-79581612
GeneTranscriptPositionBiotype
ENSMUSG00000020716 (Nf1)
neurofibromatosis 1 		ENSMUST00000071325 (Nf1-001) 79339825-79581612 protein_coding
ENSMUST00000108251 (Nf1-003) 79339792-79578942 protein_coding
ENSMUST00000122917 (Nf1-002) 79448153-79473412 processed_transcript
ENSMUST00000130979 (Nf1-008) 79448153-79473412 processed_transcript
ENSMUST00000131800 (Nf1-004) 79339887-79430788 retained_intron
ENSMUST00000137997 (Nf1-006) 79546308-79580048 protein_coding
ENSMUST00000145839 (Nf1-005) 79339693-79345186 processed_transcript
ENSMUST00000146699 (Nf1-007) 79536908-79570115 retained_intron
ENSMUSG00000049612 (Omg)
oligodendrocyte myelin glycoprotein 		ENSMUST00000164465 (Omg-001) 79500982-79504084 protein_coding
ENSMUSG00000070354 (Gm21975)
predicted gene 21975 		ENSMUST00000093983 (Gm21975-001) 79513385-79530559 nonsense_mediated_decay
ENSMUST00000170422 (Gm21975-201) 79513385-79530589 protein_coding
ENSMUSG00000078771 (Evi2a)
ecotropic viral integration site 2a 		ENSMUST00000103236 (Evi2a-001) 79526560-79530588 protein_coding
ENSMUST00000133148 (Evi2a-002) 79528068-79530609 processed_transcript
ENSMUST00000146611 (Evi2a-003) 79527685-79528146 protein_coding
ENSMUST00000154415 (Evi2a-004) 79526957-79527775 protein_coding
ENSMUST00000170799 (Evi2a-201) 79526568-79530609 protein_coding
ENSMUSG00000082304 (Gm11198)
predicted gene 11198 		ENSMUST00000119771 (Gm11198-001) 79371257-79372230 processed_pseudogene
ENSMUSG00000082529 (Gm11199)
predicted gene 11199 		ENSMUST00000118691 (Gm11199-001) 79451941-79452447 processed_pseudogene
ENSMUSG00000091523 (AU040972)
expressed sequence AU040972 		ENSMUST00000165610 (AU040972-001) 79481719-79484031 antisense
ENSMUSG00000093938 (Evi2b)
ecotropic viral integration site 2b 		ENSMUST00000179322 (Evi2b-001) 79515056-79523762 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004GN_0001ENSDARG00000004184ENSDART00000131897ENSDARG00000086573ENSDART00000147705ENSDARG00000095693ENSDART00000140604CIL_0004GN_0002ENSG00000126861ENST00000247271ENST00000580156ENST00000582029ENST00000584094ENSG00000185862ENST00000330927ENST00000577894ENSG00000196712ENST00000356175ENST00000358273ENST00000422121ENST00000431387ENST00000456735ENST00000466819ENST00000468273ENST00000471572ENST00000479536ENST00000479614ENST00000487476ENST00000488981ENST00000489712ENST00000490416ENST00000493220ENST00000495910ENST00000498569ENST00000577967ENST00000579081ENST00000581113ENST00000581790ENST00000582892ENST00000584328ENSG00000263535ENST00000581275ENSG00000266371ENST00000584382CIL_0004GN_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004GN_0001ENSDARG00000004184ENSDART00000131897ENSDARG00000086573ENSDART00000147705ENSDARG00000095693ENSDART00000140604CIL_0004GN_0002ENSG00000126861ENST00000247271ENST00000580156ENST00000582029ENST00000584094ENSG00000185862ENST00000330927ENSG00000196712ENST00000356175ENST00000358273ENST00000456735ENST00000495910ENST00000579081ENSG00000263535ENST00000581275ENSG00000266371ENST00000584382CIL_0004GN_0003ENSMUSG00000020716ENSMUST00000071325ENSMUST00000108251ENSMUST00000137997ENSMUST00000145839ENSMUSG00000049612ENSMUST00000164465ENSMUSG00000070354ENSMUST00000093983ENSMUST00000170422ENSMUSG00000078771ENSMUST00000103236ENSMUST00000133148ENSMUST00000154415ENSMUST00000170799ENSMUSG00000082304ENSMUST00000119771ENSMUSG00000082529ENSMUST00000118691ENSMUSG00000091523ENSMUST00000165610ENSMUSG00000093938ENSMUST00000179322
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004184 ENSDART00000131897 N/A N/A N/A N/A N/A N/A 0.744±0.00 0.192±0.10 0.049±0.00 N/A 0.151±0.00 N/A N/A N/A
ENSDARG00000086573 ENSDART00000147705 N/A N/A N/A 3.781±2.62 N/A N/A 0.112±0.00 N/A N/A N/A 0.292±0.00 N/A N/A N/A
ENSDARG00000095693 ENSDART00000140604 N/A N/A N/A 1.194±0.60 N/A N/A 0.946±0.34 14.567±8.31 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126861 ENST00000247271 N/A 0.182±0.00 0.251±0.00 34.659±0.99 0.451±0.00 0.265±0.00 0.094±0.00 0.100±0.01 0.175±0.15 N/A 0.113±0.00 0.332±0.00 0.053±0.03 0.261±0.20
ENST00000580156 N/A N/A N/A N/A N/A N/A 0.098±0.00 0.818±0.00 0.055±0.00 N/A 0.267±0.00 N/A N/A N/A
ENST00000582029 0.196±0.00 0.194±0.00 0.177±0.00 N/A 0.495±0.00 0.287±0.23 0.068±0.00 0.136±0.00 0.260±0.24 0.404±0.00 0.374±0.00 0.235±0.29 0.021±0.01 0.028±0.00
ENST00000584094 N/A 1.131±0.00 N/A N/A 0.254±0.00 0.403±0.00 0.220±0.13 N/A 1.275±0.00 7.871±6.14 N/A 0.643±0.52 0.164±0.08 0.171±0.00
ENSG00000185862 ENST00000330927 7.826±0.00 26.164±0.00 N/A N/A 8.058±0.27 N/A N/A N/A 2.509±0.00 16.208±0.13 N/A 3.961±0.00 6.635±0.56 N/A
ENST00000577894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196712 ENST00000356175 1.340±0.00 N/A N/A 5.811±0.35 N/A 1.371±0.00 N/A N/A 0.630±0.00 2.346±0.00 N/A 1.076±0.00 1.176±0.00 2.147±0.00
ENST00000358273 2.277±0.00 3.127±0.00 2.670±0.00 N/A 3.536±0.00 2.030±0.80 1.957±0.00 3.357±1.13 4.292±0.00 2.998±1.23 N/A 3.000±2.13 1.706±0.12 2.575±0.00
ENST00000422121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456735 N/A N/A 2.114±0.00 5.367±0.00 2.257±0.00 2.331±0.00 2.885±0.00 N/A 5.015±0.00 2.832±0.00 1.252±0.38 3.944±0.00 N/A 3.387±0.00
ENST00000466819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495910 N/A N/A N/A N/A 2.418±0.00 2.254±0.00 N/A N/A N/A N/A N/A 3.530±0.00 N/A N/A
ENST00000498569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579081 N/A N/A N/A N/A N/A 2.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263535 ENST00000581275 N/A N/A 3.179±0.00 1.329±0.00 0.173±0.00 N/A 1.202±0.00 4.761±0.00 2.157±0.00 0.167±0.00 N/A 0.662±0.74 0.077±0.00 N/A
ENSG00000266371 ENST00000584382 0.097±0.00 0.165±0.00 1.978±0.00 0.095±0.05 0.115±0.02 0.122±0.04 0.074±0.00 0.069±0.00 0.149±0.09 0.227±0.20 0.067±0.00 0.112±0.09 0.017±0.00 0.123±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020716 ENSMUST00000071325 3.265±1.44 4.576±2.23 3.893±0.58 8.870±1.09 3.796±1.38 3.403±1.68 1.276±0.72 2.545±0.50 0.994±0.45 4.996±1.99 0.191±0.00 3.536±2.11 1.031±0.12 4.987±1.74
ENSMUST00000108251 N/A 2.053±0.16 N/A N/A 0.897±0.00 2.042±0.00 0.396±0.00 N/A N/A 2.061±0.00 N/A 2.812±1.39 0.206±0.00 3.156±0.38
ENSMUST00000122917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137997 4.959±0.72 N/A 4.991±0.38 8.692±1.75 2.203±0.06 1.399±0.00 1.761±0.18 1.763±0.39 1.202±0.45 4.099±0.89 0.784±0.14 3.565±0.89 0.697±0.43 4.279±1.56
ENSMUST00000145839 N/A 2.823±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049612 ENSMUST00000164465 0.054±0.03 0.832±0.35 0.044±0.00 5.845±6.83 0.051±0.03 0.259±0.26 0.036±0.01 0.080±0.04 0.043±0.01 0.106±0.03 0.015±0.00 0.109±0.09 0.012±0.00 0.030±0.02
ENSMUSG00000070354 ENSMUST00000093983 N/A 0.562±0.14 N/A 0.235±0.07 N/A 0.903±0.00 N/A 0.288±0.00 0.244±0.01 1.112±0.00 0.094±0.00 0.683±0.19 0.023±0.00 0.076±0.06
ENSMUST00000170422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00
ENSMUSG00000078771 ENSMUST00000103236 8.124±1.49 3.301±0.86 6.288±0.50 2.573±2.47 20.832±1.19 3.542±1.07 1.903±0.45 2.376±0.58 2.719±1.88 9.309±1.53 1.392±0.25 4.627±1.55 0.765±0.82 0.401±0.23
ENSMUST00000133148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENSMUST00000146611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154415 N/A N/A N/A 11.302±0.00 N/A 3.111±0.26 N/A N/A 0.721±0.00 N/A N/A 8.214±0.00 N/A N/A
ENSMUST00000170799 2.228±0.00 0.781±0.00 N/A 0.310±0.06 N/A 0.661±0.03 N/A 0.453±0.08 N/A N/A 0.159±0.00 1.290±0.39 0.150±0.02 0.405±0.22
ENSMUSG00000082304 ENSMUST00000119771 0.129±0.10 0.161±0.08 0.114±0.00 0.140±0.07 0.221±0.11 0.105±0.03 0.106±0.05 0.090±0.04 0.050±0.03 0.194±0.03 N/A 0.306±0.19 0.102±0.00 0.130±0.06
ENSMUSG00000082529 ENSMUST00000118691 0.454±0.17 0.741±0.35 0.377±0.00 0.938±0.07 0.221±0.09 0.580±0.15 0.108±0.00 0.667±0.28 0.150±0.07 0.553±0.12 0.061±0.00 0.842±0.39 0.257±0.08 0.304±0.22
ENSMUSG00000091523 ENSMUST00000165610 0.081±0.05 N/A N/A 0.218±0.03 N/A 0.082±0.00 1.682±1.25 0.030±0.00 0.091±0.05 9.803±0.81 0.036±0.00 1.355±0.57 0.108±0.07 0.040±0.01
ENSMUSG00000093938 ENSMUST00000179322 6.275±2.35 1.905±0.52 2.627±0.52 0.395±0.08 22.778±4.02 2.167±0.46 1.422±0.44 1.833±0.57 4.522±3.41 11.308±2.21 0.533±0.63 1.947±0.41 0.629±0.48 0.106±0.06

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