C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCO cytochrome oxidase deficient homolog 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108690 Sco1-002 ENSMUSG00000069844 10090 + 11:67052670-67065331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108690
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108690 2.226±0.62 14.740±1.55 0.960±0.27 2.894±1.07 9.627±2.51 3.468±0.67 2.442±0.54 4.016±0.53 1.954±0.05 0.604±0.24 3.447±1.53 3.124±1.98 0.618±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005507 IEA copper ion binding
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006825 IEA copper ion transport
GO:0006878 IEA cellular copper ion homeostasis
GO:0008150 ND biological_process
GO:0008535 IEA respiratory chain complex IV assembly
GO:0030016 ISO myofibril

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255390 SCO1-001 protein_coding Homo_sapiens 0 684
ENST00000551045 RP11-474C8.3-001 processed_pseudogene Homo_sapiens 0 446
ENST00000577335 SCO1-006 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000577427 SCO1-002 protein_coding Homo_sapiens 0 422

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